Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034324.1-P | Field mustard | cytosol | 99.13 | 99.13 |
| CDY37900 | Canola | cytosol, extracellular, nucleus | 58.26 | 51.94 |
| CDY00182 | Canola | cytosol | 30.43 | 43.21 |
| CDX76220 | Canola | endoplasmic reticulum, extracellular | 42.61 | 32.45 |
| CDY69654 | Canola | cytosol | 59.13 | 21.18 |
| CDX92766 | Canola | cytosol | 36.52 | 20.19 |
| CDY00432 | Canola | cytosol | 43.48 | 20.0 |
| CDY13667 | Canola | extracellular, plasma membrane | 46.96 | 19.49 |
| CDX88297 | Canola | cytosol | 39.13 | 19.15 |
| CDY48199 | Canola | extracellular, plasma membrane, vacuole | 74.78 | 17.95 |
| AT3G49030.1 | Thale cress | cytosol | 66.96 | 17.38 |
| CDX73615 | Canola | cytosol | 55.65 | 17.11 |
| CDY48007 | Canola | plastid | 62.61 | 16.44 |
| AT2G04230.1 | Thale cress | cytosol | 61.74 | 15.85 |
| CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 57.39 | 15.75 |
| CDY48010 | Canola | cytosol | 59.13 | 15.14 |
| CDX78112 | Canola | cytosol | 55.65 | 14.95 |
| CDY23229 | Canola | cytosol | 52.17 | 13.99 |
| CDX87122 | Canola | cytosol | 45.22 | 13.76 |
| CDY72188 | Canola | cytosol | 51.3 | 13.75 |
| CDY23230 | Canola | cytosol | 51.3 | 13.75 |
| CDX83662 | Canola | cytosol, plastid | 47.83 | 13.29 |
| CDX95363 | Canola | cytosol | 46.96 | 12.89 |
| CDX89785 | Canola | cytosol, extracellular, nucleus | 38.26 | 12.64 |
| CDY27513 | Canola | cytosol | 60.87 | 12.09 |
| CDX89356 | Canola | cytosol, extracellular, mitochondrion, plastid | 37.39 | 11.81 |
| CDY00181 | Canola | plasma membrane, plastid, vacuole | 42.61 | 11.5 |
| CDY69799 | Canola | cytosol | 37.39 | 11.2 |
| CDX94363 | Canola | cytosol | 33.91 | 10.71 |
| CDY63198 | Canola | mitochondrion, plasma membrane | 42.61 | 10.7 |
| CDX92699 | Canola | cytosol | 27.83 | 10.22 |
| CDX94344 | Canola | cytosol, peroxisome, plastid | 36.52 | 10.02 |
| CDX83661 | Canola | cytosol, mitochondrion, nucleus | 34.78 | 10.0 |
| CDX89345 | Canola | cytosol, peroxisome, plastid | 35.65 | 9.86 |
| CDY65918 | Canola | cytosol | 35.65 | 9.58 |
| CDY42742 | Canola | cytosol | 34.78 | 9.5 |
| CDY65463 | Canola | cytosol, extracellular, nucleus | 13.04 | 9.26 |
| CDY52334 | Canola | cytosol, nucleus, vacuole | 32.17 | 8.39 |
| CDX80649 | Canola | cytosol | 28.7 | 7.64 |
| CDY06036 | Canola | cytosol | 26.96 | 7.18 |
| CDX71951 | Canola | plastid | 26.96 | 5.85 |
| CDY41819 | Canola | cytosol | 3.48 | 5.63 |
| CDX92764 | Canola | cytosol, nucleus, plasma membrane | 12.17 | 5.53 |
| CDY30423 | Canola | extracellular, golgi | 10.43 | 5.5 |
| CDY01270 | Canola | extracellular, plasma membrane | 11.3 | 4.5 |
| CDY65306 | Canola | cytosol | 8.7 | 3.09 |
| CDX71950 | Canola | cytosol | 2.61 | 2.26 |
| CDY37901 | Canola | cytosol | 0.87 | 0.41 |
Protein Annotations
| EnsemblPlants:CDY48198 | EnsemblPlantsGene:GSBRNA2T00089016001 | InterPro:FBD | ncoils:Coil | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF234 |
| PFAM:PF08387 | ProteinID:CDY48198 | ProteinID:CDY48198.1 | SEG:seg | SMART:SM00579 | UniParc:UPI0004EED0A2 |
| UniProt:A0A078IGB7 | MapMan:35.1 | : | : | : | : |
Description
BnaA04g15620DBnaA04g15620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGB7]
Coordinates
chrLK032758:-:143133..143886
Molecular Weight (calculated)
13464.4 Da
IEP (calculated)
7.712
GRAVY (calculated)
-0.400
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDSSPKLQI LKLDGSCREY CPVGCEWIQP KCVRECLLLH LETLVWTRYE WEREDVKQVA TYILKNARQL RKATFYPTCV GPKELEKLEK RREMLNELAS
101: VARGSTSCHL VFESE
101: VARGSTSCHL VFESE
001: MLEASPKLQI LKLTDLNMSS TKGNQIGQKW IQPKCVPECL LFHLETFVWT GYEWQRRDEK EVARYILRNT TSLKKATFST KPIEPVKLKV FKKRREILNE
101: LASLGRASNP SDFVFESI
101: LASLGRASNP SDFVFESI
Arabidopsis Description
F-box/FBD/LRR protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNU8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.