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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007397.1-P Field mustard cytosol 100.0 100.0
CDX80649 Canola cytosol 77.08 77.08
CDY65306 Canola cytosol 55.56 74.07
CDX71950 Canola cytosol 22.69 73.68
CDY52334 Canola cytosol, nucleus, vacuole 65.05 63.72
CDX71951 Canola plastid 59.49 48.49
CDX92699 Canola cytosol 34.26 47.28
CDX94344 Canola cytosol, peroxisome, plastid 45.37 46.78
CDY42742 Canola cytosol 44.68 45.84
CDX89345 Canola cytosol, peroxisome, plastid 43.75 45.43
CDX92766 Canola cytosol 21.06 43.75
AT4G26350.1 Thale cress cytosol 41.9 42.0
CDY65463 Canola cytosol, extracellular, nucleus 14.58 38.89
CDX73615 Canola cytosol 30.79 35.56
CDY00181 Canola plasma membrane, plastid, vacuole 33.1 33.57
CDX78112 Canola cytosol 33.1 33.41
CDY00182 Canola cytosol 6.25 33.33
CDY69654 Canola cytosol 24.54 33.02
CDY01270 Canola extracellular, plasma membrane 21.99 32.87
CDY69799 Canola cytosol 28.7 32.29
CDX89356 Canola cytosol, extracellular, mitochondrion, plastid 27.08 32.14
CDX83662 Canola cytosol, plastid 30.79 32.13
CDX83661 Canola cytosol, mitochondrion, nucleus 29.63 32.0
CDY23229 Canola cytosol 31.71 31.93
CDX94363 Canola cytosol 26.85 31.87
CDX87122 Canola cytosol 27.78 31.75
CDY23230 Canola cytosol 31.48 31.7
CDX95363 Canola cytosol 30.56 31.5
CDY72188 Canola cytosol 31.25 31.47
CDY48007 Canola plastid 31.02 30.59
CDY48010 Canola cytosol 31.48 30.29
CDY37901 Canola cytosol 17.13 30.2
CDY63198 Canola mitochondrion, plasma membrane 31.94 30.13
CDY13667 Canola extracellular, plasma membrane 18.98 29.6
CDX89785 Canola cytosol, extracellular, nucleus 23.84 29.6
CDX93829 Canola endoplasmic reticulum, golgi, mitochondrion, plastid 28.7 29.59
CDX88297 Canola cytosol 15.74 28.94
CDY00432 Canola cytosol 16.67 28.8
CDY48199 Canola extracellular, plasma membrane, vacuole 31.25 28.18
CDY48198 Canola cytosol 7.18 26.96
CDY65918 Canola cytosol 26.62 26.87
CDX76220 Canola endoplasmic reticulum, extracellular 9.03 25.83
CDY37900 Canola cytosol, extracellular, nucleus 7.64 25.58
CDY27513 Canola cytosol 32.18 24.01
CDX92764 Canola cytosol, nucleus, plasma membrane 13.66 23.32
CDY30423 Canola extracellular, golgi 7.87 15.6
CDY41819 Canola cytosol 2.55 15.49
Protein Annotations
EnsemblPlants:CDY06036EnsemblPlantsGene:GSBRNA2T00121888001Gene3D:3.80.10.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:FBDInterPro:IPR001810InterPro:IPR032675InterPro:LRR_dom_sf
PANTHER:PTHR32212PFAM:PF00646PFAM:PF08387ProteinID:CDY06036ProteinID:CDY06036.1SMART:SM00579
SUPFAM:SSF52058SUPFAM:SSF81383UniParc:UPI0002542DD9MapMan:35.1::
Description
BnaA09g37440D
Coordinates
chrLK031967:+:412501..413970
Molecular Weight (calculated)
49507.8 Da
IEP (calculated)
6.898
GRAVY (calculated)
-0.139
Length
432 amino acids
Sequence
(BLAST)
001: MDMISQLSDD LLIRILSRVP TKHVMATCCL SKRWLRLWSL VPKLDYADCS YSNENYATFT QFVYRSLMSN KAPVLETLDL NLGSKCQAID VGNWIETAVV
101: CHRVQAIIAI IHPSNERGTM ISLPSSMYTC ETLETLELYD CFRLDVPFSV RLPSLKTLKL VDVDYADNKV SSLTRLLSGC PNLDFLLVHH DNLDVALMVP
201: PSLGKLIMYN NGRNQKGSGF VIDAPSLVWL YVRDDVLYDF HQIEHMPNLE VAHVEMTFAV RNHKFLKAFT CARSLTLCLS FLEVLSPCGM IFHNLVDLTL
301: NTCAQGWWDL VTRMLQDSPK LRSLKLTDEH QLEFTSIETP ESWKRPSSVP ECFLHSFEIF EWKGYKGRRG DLDMATYVIT NATRLKKSKF SSQPHDDSEG
401: DRIHRDLNSL QAASPHLMFL SQERNKRQRV ET
Best Arabidopsis Sequence Match ( AT4G26340.1 )
(BLAST)
001: MDRISQLSDD LLLQILSFIP GKDVVATSLL SKRWQSLWML VSELEYDDSY HTGDYKSFSQ FVYRSLLSNN APVIKHLHLN LGPDCPAIDI GLWIGFALTR
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD
Arabidopsis Description
F-box/FBD/LRR-repeat protein At4g26340 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1R7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.