Factsheet for AT4G26350.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G26340.1	Thale cress	cytosol	49.42	50.84
CDY65306	Canola	cytosol	33.87	45.06
CDY52334	Canola	cytosol, nucleus, vacuole	42.92	41.95
Bra007575.1-P	Field mustard	extracellular, vacuole	42.92	41.95
CDY06036	Canola	cytosol	42.0	41.9
Bra007397.1-P	Field mustard	cytosol	42.0	41.9
CDX71950	Canola	cytosol	12.76	41.35
CDX80649	Canola	cytosol	40.6	40.51
AT3G26922.2	Thale cress	cytosol	27.38	38.56
AT3G52690.1	Thale cress	extracellular, plasma membrane	24.83	35.79
AT3G49030.1	Thale cress	cytosol	36.66	35.67
AT3G49045.1	Thale cress	cytosol	9.74	35.59
AT4G13965.1	Thale cress	endoplasmic reticulum, peroxisome	34.34	34.99
AT3G52680.1	Thale cress	cytosol	36.89	34.87
AT2G04230.1	Thale cress	cytosol	36.19	34.82
AT3G49020.1	Thale cress	cytosol, nucleus, plasma membrane	35.27	34.0
AT4G00160.1	Thale cress	cytosol	34.8	33.11
AT3G26930.2	Thale cress	extracellular, peroxisome, plastid	34.8	33.04
AT3G49040.1	Thale cress	cytosol	23.67	32.8
AT1G55030.2	Thale cress	cytosol	32.71	32.64
AT3G51530.1	Thale cress	cytosol, endoplasmic reticulum, nucleus, plastid	34.34	32.53
AT3G26920.3	Thale cress	cytosol	24.83	31.47
CDX71951	Canola	plastid	32.95	26.79
AT3G55670.1	Thale cress	cytosol	10.44	20.64

Protein Annotations

MapMan:35.1	EntrezGene:828741	UniProt:A0A178UX80	ProteinID:AEE85188.1	ArrayExpress:AT4G26350	EnsemblPlantsGene:AT4G26350
RefSeq:AT4G26350	TAIR:AT4G26350	RefSeq:AT4G26350-TAIR-G	EnsemblPlants:AT4G26350.1	TAIR:AT4G26350.1	Unigene:At.54518
ProteinID:CAB38964.1	ProteinID:CAB79490.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	InterPro:IPR001810	InterPro:Leu-rich_rpt_2	RefSeq:NP_194365.1
ProteinID:OAO98539.1	PFAM:PF00646	PFAM:PF07723	PFAM:PF08387	PFscan:PS50181	PANTHER:PTHR32212
PANTHER:PTHR32212:SF233	UniProt:Q9STQ0	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00000A6802

Description

Putative F-box/FBD/LRR-repeat protein At4g26350 [Source:UniProtKB/Swiss-Prot;Acc:Q9STQ0]

Coordinates

chr4:+:13326853..13328315

Molecular Weight (calculated)

49658.7 Da

IEP (calculated)

8.424

GRAVY (calculated)

-0.022

Length

431 amino acids

Sequence
(BLAST)

001: MDIISQCPDH LLLRILSFIP TKDVIVTSLL SKRWGSLWRW VPKLEYDFTR QNMRFVKFVY RSLLQNNAPV LESLHLKNII LYAECRTVDI GGWIDIAVSR
101: RVRELEISIN CSDEKFRLPS SLYTCGTLES FILTIKHCHL VDVPLAVCLP SLKKLHLRCI GWAYNATLLR LISGCTNLEE LRLARPDDDG DYIMIHEAGS
201: TIDYMSIFER RYMFEFMFDQ MFGKGSSNGI NAPLKYFSIS NNYRIHNFRG IEKMPDWVEA RIAVTGGSHK YLKEITYAKG LYVCLSVSEV MNPYDMIFHM
301: LVDLTICTCT QGWWDLLTHM LQGSPKLRFL TLTNDHCREL PSLETPACWK RPSSVPACLL SSLQAFTWSG YKGRQGDKEV VKYVLRNATG LKKRIFISKS
401: NDFGEKFCML QELASVPTPS PSCQLLFDRI F

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.