CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80649	Canola	cytosol	48.49	59.49
CDY06036	Canola	cytosol	48.49	59.49
CDY65306	Canola	cytosol	30.0	49.07
CDY52334	Canola	cytosol, nucleus, vacuole	37.92	45.58
CDX92766	Canola	cytosol	16.23	41.35
CDY65463	Canola	cytosol, extracellular, nucleus	11.89	38.89
CDY00182	Canola	cytosol	5.47	35.8
CDY42742	Canola	cytosol	27.92	35.15
CDX94344	Canola	cytosol, peroxisome, plastid	27.74	35.08
CDX89345	Canola	cytosol, peroxisome, plastid	26.79	34.13
CDX92699	Canola	cytosol	19.62	33.23
AT4G26350.1	Thale cress	cytosol	26.79	32.95
CDY13667	Canola	extracellular, plasma membrane	15.66	29.96
CDX87122	Canola	cytosol	21.13	29.63
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	19.62	28.57
CDX89785	Canola	cytosol, extracellular, nucleus	18.68	28.45
CDY00181	Canola	plasma membrane, plastid, vacuole	22.83	28.4
CDY69654	Canola	cytosol	17.17	28.35
CDX73615	Canola	cytosol	20.0	28.34
CDX94363	Canola	cytosol	19.43	28.3
CDX95363	Canola	cytosol	22.26	28.16
CDX78112	Canola	cytosol	22.45	27.8
CDY72188	Canola	cytosol	22.45	27.74
CDX83662	Canola	cytosol, plastid	21.51	27.54
CDY23230	Canola	cytosol	22.26	27.51
CDY23229	Canola	cytosol	22.26	27.51
CDY01270	Canola	extracellular, plasma membrane	14.72	26.99
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	21.32	26.97
CDY48198	Canola	cytosol	5.85	26.96
CDY48007	Canola	plastid	22.26	26.94
CDY63198	Canola	mitochondrion, plasma membrane	23.21	26.86
CDY69799	Canola	cytosol	19.43	26.82
CDX83661	Canola	cytosol, mitochondrion, nucleus	20.19	26.75
CDY48010	Canola	cytosol	22.26	26.28
CDY00432	Canola	cytosol	12.26	26.0
CDX88297	Canola	cytosol	11.51	25.96
CDY37900	Canola	cytosol, extracellular, nucleus	6.23	25.58
CDY37901	Canola	cytosol	11.7	25.31
CDX76220	Canola	endoplasmic reticulum, extracellular	6.98	24.5
CDY48199	Canola	extracellular, plasma membrane, vacuole	21.89	24.22
CDY65918	Canola	cytosol	18.11	22.43
CDY27513	Canola	cytosol	22.45	20.55
CDY30423	Canola	extracellular, golgi	6.42	15.6
CDX92764	Canola	cytosol, nucleus, plasma membrane	6.98	14.62
CDY41819	Canola	cytosol	1.7	12.68
CDX71950	Canola	cytosol	2.26	9.02

Protein Annotations

EnsemblPlants:CDX71951	EnsemblPlantsGene:GSBRNA2T00155709001	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PFAM:PF07723	PFAM:PF08387	ProteinID:CDX71951	ProteinID:CDX71951.1
SEG:seg	SMART:SM00579	SUPFAM:SSF52047	UniParc:UPI0004EF2485	MapMan:35.1	:

Description

BnaC08g29230D

Coordinates

chrLK031795:+:1450825..1453601

Molecular Weight (calculated)

59957.9 Da

IEP (calculated)

7.031

GRAVY (calculated)

-0.211

Length

530 amino acids

Sequence
(BLAST)

001: MPTFLVPLPS SAPRNQSQPV LSNPLHPPEP PDPPDPTITL QPPPSSSVNT SPPQSPSLFC ARPSSISVQS TRSLPSPFRF HLSLHNKVSK LVPVWRSLAD
101: SWEVADASML ESPTPQGHVN QNRQPLPFVG LHQLDLPMSQ PYKCWLSLMV SFPHWQRLTP QPDVRSQELE HQLECYFSSS ATRVFLVSLQ DNFVDSCSIV
201: AAWMHSGFDS SFTEASCQFI GCSQSRDDKG TMISLPSSMY TCETLETLDL CDCLRLDVPF SVRLPSLKTL VLIDVEYADN KVSSLTRLLS GCPNLDSLFL
301: VHDNLDVALM VPSLRKLRMY NNGRYQKGGG FVIDAPSLVS LYIRDYVLYH FHRIEHMPKL EEAHVDMIQT VRNYKFLKAF TCARSLTLCL SFSEVLSPCG
401: MIFHNLVYLT LNTCFLGWWD LLTHMLQDSP KLGSLKLIDE HELAEFTSIE TPDSWKRPSS VPTCLLHSFE IFEWKGYKGR RGDVDVATYL IANATRLKKS
501: KFSSQPHDDS EGDRIHRDLN IKHKRIRSCC

Best Arabidopsis Sequence Match ( AT1G55030.1 )
(BLAST)

001: MNNRGAVTDM ISQLPEPLIL QILGSLPTKV AITTSVLSKQ WQSHWKMMPK LEFDSFLRRL DLENVTKCLL SHKAPVLQTF SLKVRLDRRN NAVDIGCLIG
101: IAMTRNVRKL VLEVYFHRGT FTFPRSLYHC ETLETLELIL NVVMDVPPSV YLKSLKTLYL LAVDFKDDES VINLLSGCPN LQDLVMRRNS SSNVKTFTIA
201: VPSLQRLAIH NGSGTPQHCG YTINTPSLKY LKLEGSKAFE SFMVENVSEL IEVNITDVSE IIDEKLRVFL TSVTRLSLAL SPSVFTFPTG IIFNQLVYLE
301: ICTNKTSWWK LLPLMLHSSP KLQVLKLIDD TDGMNYVEAS GEWNQPKNVP ECLHHLEKFI WEGYKWKREE IEVAKYILKN TNRLKRAIFS LKGISSEDRL
401: VVVEDLKSVV MATTNSCQFQ FI

Arabidopsis Description

RNI-like superfamily protein [Source:TAIR;Acc:AT1G55030]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.