Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00182 | Canola | cytosol | 5.63 | 4.94 |
| CDX76220 | Canola | endoplasmic reticulum, extracellular | 9.86 | 4.64 |
| CDY30423 | Canola | extracellular, golgi | 11.27 | 3.67 |
| CDY48198 | Canola | cytosol | 5.63 | 3.48 |
| CDX92766 | Canola | cytosol | 9.86 | 3.37 |
| CDY37900 | Canola | cytosol, extracellular, nucleus | 5.63 | 3.1 |
| CDY65463 | Canola | cytosol, extracellular, nucleus | 7.04 | 3.09 |
| CDY06036 | Canola | cytosol | 15.49 | 2.55 |
| CDX80649 | Canola | cytosol | 15.49 | 2.55 |
| CDX73615 | Canola | cytosol | 12.68 | 2.41 |
| CDY00432 | Canola | cytosol | 8.45 | 2.4 |
| CDX78112 | Canola | cytosol | 14.08 | 2.34 |
| CDX89785 | Canola | cytosol, extracellular, nucleus | 11.27 | 2.3 |
| CDY13667 | Canola | extracellular, plasma membrane | 8.45 | 2.17 |
| CDX95363 | Canola | cytosol | 12.68 | 2.15 |
| CDY69799 | Canola | cytosol | 11.27 | 2.08 |
| CDY48007 | Canola | plastid | 12.68 | 2.05 |
| CDY52334 | Canola | cytosol, nucleus, vacuole | 12.68 | 2.04 |
| CDX94363 | Canola | cytosol | 9.86 | 1.92 |
| CDX89356 | Canola | cytosol, extracellular, mitochondrion, plastid | 9.86 | 1.92 |
| CDX92699 | Canola | cytosol | 8.45 | 1.92 |
| CDY69654 | Canola | cytosol | 8.45 | 1.87 |
| CDY23230 | Canola | cytosol | 11.27 | 1.86 |
| CDY23229 | Canola | cytosol | 11.27 | 1.86 |
| CDY72188 | Canola | cytosol | 11.27 | 1.86 |
| CDX87122 | Canola | cytosol | 9.86 | 1.85 |
| AT3G55670.1 | Thale cress | cytosol | 5.63 | 1.83 |
| CDX83661 | Canola | cytosol, mitochondrion, nucleus | 9.86 | 1.75 |
| CDY27513 | Canola | cytosol | 14.08 | 1.73 |
| CDX71951 | Canola | plastid | 12.68 | 1.7 |
| CDX89345 | Canola | cytosol, peroxisome, plastid | 9.86 | 1.68 |
| CDX94344 | Canola | cytosol, peroxisome, plastid | 9.86 | 1.67 |
| CDY42742 | Canola | cytosol | 9.86 | 1.66 |
| CDY48010 | Canola | cytosol | 9.86 | 1.56 |
| CDY65306 | Canola | cytosol | 7.04 | 1.54 |
| CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 8.45 | 1.43 |
| CDY00181 | Canola | plasma membrane, plastid, vacuole | 8.45 | 1.41 |
| CDY01270 | Canola | extracellular, plasma membrane | 5.63 | 1.38 |
| CDX88297 | Canola | cytosol | 4.23 | 1.28 |
| CDX83662 | Canola | cytosol, plastid | 7.04 | 1.21 |
| CDX92764 | Canola | cytosol, nucleus, plasma membrane | 4.23 | 1.19 |
| CDY63198 | Canola | mitochondrion, plasma membrane | 7.04 | 1.09 |
| CDY48199 | Canola | extracellular, plasma membrane, vacuole | 7.04 | 1.04 |
| CDY37901 | Canola | cytosol | 2.82 | 0.82 |
| CDY65918 | Canola | cytosol | 4.23 | 0.7 |
| CDX71950 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.2 | UniProt:A0A078HWQ5 | EnsemblPlants:CDY41819 | ProteinID:CDY41819 | ProteinID:CDY41819.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00073731001 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PFAM:PF00646 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF233 |
| SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0004EDFF00 | : | : | : |
Description
BnaC02g12300DBnaC02g12300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWQ5]
Coordinates
chrLK032507:+:244347..244612
Molecular Weight (calculated)
8422.2 Da
IEP (calculated)
4.962
GRAVY (calculated)
-0.283
Length
71 amino acids
Sequence
(BLAST)
(BLAST)
1: MDMISKLPED LLLRILSELP TAKDVVATMV LSKRWQPLWK SVPKLVFDDD DDRYQNIDTI RNFAFRTYSN F
001: MDKLSQLPEA LLVRILSLLS AKDVVSTMVL SKRWQFLWML VPKLIYDDSY QAIEYGSFSR FVDRSFTLHD AQVLDTLHFK LGKTSCGTGD IRVWIKTAEK
101: SCLRELIIEI DKSNSDNSSV VLPRSLYTCC RMLVTLKLNN AVLVDATSSF SFPSLKTLSL VSMKFPGDEL IKMLLSNCPV LEDLVVKRCP YDNVTTFTVR
201: VSSLKCLVLH ETELASINAD CGFVIDTPSL ECLDIEDGRG GFCVIENNMT KVVKANVCNS YVHTQQLMGS ISSVKRLYVC IPSSKDAYPV GSVFHCLVRL
301: TICTCETEWL NLLMCVLRDS PKLRELKLVK NHVYRSHQPR PCWNEPSAVP ECLLTSLETL EWVKYEGTEE EKEVAAFILR SGSCLKKVTI SSKSTDINKK
401: FEMLKELSLL FRRSPTCQIA FD
101: SCLRELIIEI DKSNSDNSSV VLPRSLYTCC RMLVTLKLNN AVLVDATSSF SFPSLKTLSL VSMKFPGDEL IKMLLSNCPV LEDLVVKRCP YDNVTTFTVR
201: VSSLKCLVLH ETELASINAD CGFVIDTPSL ECLDIEDGRG GFCVIENNMT KVVKANVCNS YVHTQQLMGS ISSVKRLYVC IPSSKDAYPV GSVFHCLVRL
301: TICTCETEWL NLLMCVLRDS PKLRELKLVK NHVYRSHQPR PCWNEPSAVP ECLLTSLETL EWVKYEGTEE EKEVAAFILR SGSCLKKVTI SSKSTDINKK
401: FEMLKELSLL FRRSPTCQIA FD
Arabidopsis Description
Probable FBD-associated F-box protein At1g32375 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM1]
SUBAcon: [extracellular,plasma membrane]
SUBAcon: [extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.