CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034248.1-P	Field mustard	golgi, mitochondrion, plasma membrane	94.54	98.86
CDY00181	Canola	plasma membrane, plastid, vacuole	84.72	91.08
AT4G13965.1	Thale cress	endoplasmic reticulum, peroxisome	51.75	56.03
CDY00182	Canola	cytosol	9.39	53.09
AT1G55030.2	Thale cress	cytosol	48.91	51.85
CDY69654	Canola	cytosol	35.37	50.47
CDX83661	Canola	cytosol, mitochondrion, nucleus	43.45	49.75
CDY13667	Canola	extracellular, plasma membrane	29.48	48.74
CDX83662	Canola	cytosol, plastid	43.01	47.58
CDY69799	Canola	cytosol	39.52	47.14
CDX89785	Canola	cytosol, extracellular, nucleus	35.37	46.55
CDX88297	Canola	cytosol	23.8	46.38
CDY01270	Canola	extracellular, plasma membrane	29.26	46.37
CDX87122	Canola	cytosol	37.77	45.77
CDX73615	Canola	cytosol	37.34	45.72
CDY00432	Canola	cytosol	24.89	45.6
CDX78112	Canola	cytosol	42.58	45.56
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	41.48	45.35
CDY48010	Canola	cytosol	44.1	44.99
CDY48007	Canola	plastid	42.14	44.06
CDY48199	Canola	extracellular, plasma membrane, vacuole	45.63	43.63
CDY48198	Canola	cytosol	10.7	42.61
CDY37901	Canola	cytosol	22.27	41.63
CDY23230	Canola	cytosol	38.65	41.26
CDY23229	Canola	cytosol	38.65	41.26
CDY65918	Canola	cytosol	38.43	41.12
CDX76220	Canola	endoplasmic reticulum, extracellular	13.54	41.06
CDY72188	Canola	cytosol	38.43	41.03
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	32.1	40.38
CDX95363	Canola	cytosol	36.46	39.86
CDX94363	Canola	cytosol	31.66	39.84
CDY37900	Canola	cytosol, extracellular, nucleus	10.92	38.76
CDX92699	Canola	cytosol	25.11	36.74
CDY27513	Canola	cytosol	46.29	36.61
CDY65306	Canola	cytosol	25.55	36.11
CDX92766	Canola	cytosol	16.38	36.06
CDY42742	Canola	cytosol	32.97	35.87
CDX94344	Canola	cytosol, peroxisome, plastid	32.31	35.32
CDX89345	Canola	cytosol, peroxisome, plastid	31.88	35.1
CDY65463	Canola	cytosol, extracellular, nucleus	11.79	33.33
CDY52334	Canola	cytosol, nucleus, vacuole	31.44	32.65
CDY06036	Canola	cytosol	30.13	31.94
CDX80649	Canola	cytosol	28.82	30.56
CDX71950	Canola	cytosol	8.08	27.82
CDX71951	Canola	plastid	26.86	23.21
CDX92764	Canola	cytosol, nucleus, plasma membrane	10.92	19.76
CDY30423	Canola	extracellular, golgi	8.3	17.43
CDY41819	Canola	cytosol	1.09	7.04

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078J8H6	EnsemblPlants:CDY63198	ProteinID:CDY63198	ProteinID:CDY63198.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00038019001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646	PFAM:PF08387
PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00579	SUPFAM:SSF52058	SUPFAM:SSF81383	UniParc:UPI0004EEF254
SEG:seg	:	:	:	:	:

Description

BnaA09g52230DBnaA09g52230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8H6]

Coordinates

chrLK034260:-:966..5090

Molecular Weight (calculated)

53159.6 Da

IEP (calculated)

10.269

GRAVY (calculated)

-0.051

Length

458 amino acids

Sequence
(BLAST)

001: MNRSRVFLKL LSSRDQLNVW SLFYYKRRVT GSMSNQDLEN ADRISELPEA LILLILCLLP MKVAIATSLL SKQWRYLWKL MPKLKFDYLD HKRQLGTFSS
101: NVCSTLVSHM SPVLQSLYLI VHQERCNAKD IGILLGIALG LHVHELVLEV RSREVYKFPR SLFIVNTLRT LKLRYNVHMD VPSLVRFKSL RNLHLHYVEY
201: RDHNSVINLF GGCPNLKTLT VHRYSHSSVK TFTISVPSLE RLSIYNSNGG QVDWGYAINA PSLKLLKIKG ICGLGFCLIE NVMELVEASI IDVSSISNEN
301: LLGSLTSVKR LSLRISPLKV TFPTGSIFDQ LVYLELHAYK EAWWNLLTLM LDRSPKLKTL KLINKWHCEK EYVGRGEWKQ PENVPKCFWF LLETFIWKGY
401: KWQREDEKQV AKYVLKNAIN LKRAIISSKR IKPKERVEVV KDLKSVVRAS NFCQLIFK

Best Arabidopsis Sequence Match ( AT4G13965.1 )
(BLAST)

001: KRGRGIVNAD RISQLPEALI IQILSLLPTE VAVTTSVLSK QWQFLWKMLP KLNFDSLDQR HEFKTFSKNV KRALLSHKAP VLHSLHLIVH LHLCNSMNTA
101: KLIGIAFACN LRKLVLEVDG GRFSIPESLY NCETLDTLEL KYSILMDVPS SICLKSLRTL HLHYVDFKDN ESALNLLSGC PNLENLVVHR YPFSSVKTYT
201: IAVSSLKRLT IYTSSTVDPR AGYVINSPSL TYLKIVGQIG FCLIENVPEL VEASMIVSSQ IINKNLLESL TSVKRLFLEF SPLMIKFPAG SIFYQLVYLE
301: LLTHEAECLN LLTLMLNSSP KLQILKLLSP KYQSWKKDVV GKWNKPKIVP ECLLFHLETF MWKGYEWKRN DETEVAKYIL SNTNRLKRAT FFSKPISSEE
401: RVKMVKNLNS VVRALNSCQL LIK

Arabidopsis Description

Protein with RNI-like/FBD-like domains [Source:TAIR;Acc:AT4G13965]
SUBAcon: [endoplasmic reticulum,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.