Factsheet for AT1G55030.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G13965.1	Thale cress	endoplasmic reticulum, peroxisome	53.24	54.37
CDY00181	Canola	plasma membrane, plastid, vacuole	51.16	51.88
Bra034248.1-P	Field mustard	golgi, mitochondrion, plasma membrane	51.85	51.14
AT3G26922.2	Thale cress	cytosol	34.95	49.35
CDY63198	Canola	mitochondrion, plasma membrane	51.85	48.91
AT3G26920.3	Thale cress	cytosol	37.73	47.94
AT3G26930.2	Thale cress	extracellular, peroxisome, plastid	48.61	46.26
AT3G52680.1	Thale cress	cytosol	48.61	46.05
AT3G52690.1	Thale cress	extracellular, plasma membrane	31.25	45.15
AT3G51530.1	Thale cress	cytosol, endoplasmic reticulum, nucleus, plastid	46.76	44.4
AT2G04230.1	Thale cress	cytosol	45.6	43.97
AT3G49020.1	Thale cress	cytosol, nucleus, plasma membrane	44.68	43.18
AT4G00160.1	Thale cress	cytosol	44.44	42.38
AT3G49030.1	Thale cress	cytosol	43.29	42.21
AT3G49045.1	Thale cress	cytosol	11.34	41.53
AT3G49040.1	Thale cress	cytosol	28.7	39.87
AT4G26340.1	Thale cress	cytosol	38.66	39.86
AT4G26350.1	Thale cress	cytosol	32.64	32.71
AT3G55670.1	Thale cress	cytosol	13.43	26.61

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:841945	UniProt:A0A1P8AQZ2	ProteinID:AAG51107.1	ProteinID:AEE33176.1
ProteinID:ANM59070.1	ArrayExpress:AT1G55030	EnsemblPlantsGene:AT1G55030	RefSeq:AT1G55030	TAIR:AT1G55030	RefSeq:AT1G55030-TAIR-G
EnsemblPlants:AT1G55030.2	Unigene:At.52211	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_2	RefSeq:NP_001321463.1	RefSeq:NP_175901.1	ProteinID:OAP17337.1	PFAM:PF07723	PFAM:PF08387
PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00579	SUPFAM:SSF52058	SUPFAM:SSF81383
UniParc:UPI000849307B	:	:	:	:	:

Description

RNI-like superfamily protein [Source:TAIR;Acc:AT1G55030]

Coordinates

chr1:-:20530417..20532151

Molecular Weight (calculated)

49311.4 Da

IEP (calculated)

8.608

GRAVY (calculated)

-0.040

Length

432 amino acids

Sequence
(BLAST)

001: MKQCKRDGES MNNRGAVTDM ISQLPEPLIL QILGSLPTKV AITTSVLSKQ WQSHWKMMPK LEFDSFLRRL DLENVTKCLL SHKAPVLQTF SLKVRLDRRN
101: NAVDIGCLIG IAMTRNVRKL VLEVYFHRGT FTFPRSLYHC ETLETLELIL NVVMDVPPSV YLKSLKTLYL LAVDFKDDES VINLLSGCPN LQDLVMRRNS
201: SSNVKTFTIA VPSLQRLAIH NGSGTPQHCG YTINTPSLKY LKLEGSKAFE SFMVENVSEL IEVNITDVSE IIDEKLRVFL TSVTRLSLAL SPSVFTFPTG
301: IIFNQLVYLE ICTNKTSWWK LLPLMLHSSP KLQVLKLIDD TDGMNYVEAS GEWNQPKNVP ECLHHLEKFI WEGYKWKREE IEVAKYILKN TNRLKRAIFS
401: LKGISSEDRL VVVEDLKSVV MATTNSCQFQ FI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.