Factsheet for AT3G52680.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G00160.1	Thale cress	cytosol	79.39	79.91
CDX78112	Canola	cytosol	56.58	60.28
CDX73615	Canola	cytosol	49.34	60.16
AT3G52690.1	Thale cress	extracellular, plasma membrane	38.38	58.53
CDY23229	Canola	cytosol	51.97	55.24
CDY72188	Canola	cytosol	51.54	54.78
AT3G49020.1	Thale cress	cytosol, nucleus, plasma membrane	53.51	54.59
CDY23230	Canola	cytosol	51.32	54.55
CDX76220	Canola	endoplasmic reticulum, extracellular	17.98	54.3
AT3G49045.1	Thale cress	cytosol	14.04	54.24
Bra006939.1-P	Field mustard	cytosol	39.04	53.94
AT3G51530.1	Thale cress	cytosol, endoplasmic reticulum, nucleus, plastid	53.51	53.63
AT3G26922.2	Thale cress	cytosol	35.96	53.59
CDX95363	Canola	cytosol	48.46	52.74
AT3G49030.1	Thale cress	cytosol	50.66	52.14
AT4G13965.1	Thale cress	endoplasmic reticulum, peroxisome	48.03	51.77
AT2G04230.1	Thale cress	cytosol	49.12	50.0
AT1G55030.2	Thale cress	cytosol	46.05	48.61
AT3G26920.3	Thale cress	cytosol	36.18	48.53
AT3G49040.1	Thale cress	cytosol	32.46	47.59
AT3G26930.2	Thale cress	extracellular, peroxisome, plastid	46.27	46.48
AT4G26340.1	Thale cress	cytosol	39.25	42.72
AT4G26350.1	Thale cress	cytosol	34.87	36.89
AT3G55670.1	Thale cress	cytosol	16.23	33.95

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:824434	ProteinID:AEE78979.1	ArrayExpress:AT3G52680	EnsemblPlantsGene:AT3G52680
RefSeq:AT3G52680	TAIR:AT3G52680	RefSeq:AT3G52680-TAIR-G	EnsemblPlants:AT3G52680.1	TAIR:AT3G52680.1	EMBL:BT028979
ProteinID:CAB89229.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	RefSeq:NP_190836.2	PFAM:PF00646	PFAM:PF07723
PFAM:PF08387	PO:PO:0000293	PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	UniProt:Q9LXJ6
SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000034EFF3	:	:

Description

F-box/FBD/LRR-repeat protein At3g52680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXJ6]

Coordinates

chr3:+:19526968..19529062

Molecular Weight (calculated)

52258.2 Da

IEP (calculated)

5.587

GRAVY (calculated)

-0.107

Length

456 amino acids

Sequence
(BLAST)

001: MISPTMEQGE SLRIRVVMGK DRISELPDGL LLKILSSLPT NIVVATSVLS KQWRSLWKLV PNLEFDSDDY ESEHYTFSEI VCKSFLSHKA PVLESFRLKF
101: VNFNPVDIGL WVGIAFSRHL RELVLDFYPA ELGKGVTFTF PSSLCTCNTL ETLKLVLCIL VDIPSPVLMK SLRTLHLEFV RYKDESSVRN LLSGCPGLEE
201: LRLYRGDDSD IKVFTIEVPS LQRLTIHDNN DGPEFWGYVI NAPFLKYLLI EELRCPEFCL NAPELVEANI AEVTSITIEK FLGSFTSVSR LLLNLSPLKI
301: TYPTGSMFYQ LVSLEMYTRE AEWWNLLTLM LENSPKLQVL KLTDRSQNFH KDGLVSGKWN EPKDVPECLL SQLETFVWRR FDWGREEEKE IATYILKNGR
401: RLKKATFSTN PIESEELNKL KERRKVLNGL DGVVRASNSC QLVFKFDPSY LGSDSP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.