Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G55670.1 | Thale cress | cytosol | 36.44 | 19.72 |
| AT3G52690.1 | Thale cress | extracellular, plasma membrane | 45.76 | 18.06 |
| AT3G49030.1 | Thale cress | cytosol | 65.25 | 17.38 |
| AT2G04230.1 | Thale cress | cytosol | 64.41 | 16.96 |
| AT3G26920.3 | Thale cress | cytosol | 47.46 | 16.47 |
| AT3G49020.1 | Thale cress | cytosol, nucleus, plasma membrane | 61.02 | 16.11 |
| AT4G00160.1 | Thale cress | cytosol | 54.24 | 14.13 |
| AT3G52680.1 | Thale cress | cytosol | 54.24 | 14.04 |
| AT4G13965.1 | Thale cress | endoplasmic reticulum, peroxisome | 49.15 | 13.71 |
| AT3G51530.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 51.69 | 13.41 |
| AT3G26930.2 | Thale cress | extracellular, peroxisome, plastid | 44.07 | 11.45 |
| AT1G55030.2 | Thale cress | cytosol | 41.53 | 11.34 |
| AT4G26340.1 | Thale cress | cytosol | 38.14 | 10.74 |
| AT4G26350.1 | Thale cress | cytosol | 35.59 | 9.74 |
| AT3G26922.2 | Thale cress | cytosol | 1.69 | 0.65 |
| AT3G49040.1 | Thale cress | cytosol | 0.0 | 0.0 |
| Bra019575.1-P | Field mustard | cytosol | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:AT3G49045 | EnsemblPlants:AT3G49045.1 | EnsemblPlantsGene:AT3G49045 | EntrezGene:824065 | GO:GO:0008150 | InterPro:FBD |
| PANTHER:PTHR32212 | PANTHER:PTHR32212:SF234 | PFAM:PF08387 | ProteinID:ANM64256.1 | RefSeq:NP_190473.3 | SMART:SM00579 |
| UniParc:UPI000848FD32 | UniProt:A0A1I9LNU8 | MapMan:35.1 | : | : | : |
Description
F-box/FBD/LRR protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNU8]
Coordinates
chr3:+:18178861..18179339
Molecular Weight (calculated)
13729.8 Da
IEP (calculated)
10.248
GRAVY (calculated)
-0.430
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEASPKLQI LKLTDLNMSS TKGNQIGQKW IQPKCVPECL LFHLETFVWT GYEWQRRDEK EVARYILRNT TSLKKATFST KPIEPVKLKV FKKRREILNE
101: LASLGRASNP SDFVFESI
101: LASLGRASNP SDFVFESI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.