Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G49045.1 | Thale cress | cytosol | 19.72 | 36.44 |
| CDY37900 | Canola | cytosol, extracellular, nucleus | 19.27 | 32.56 |
| AT3G52690.1 | Thale cress | extracellular, plasma membrane | 26.15 | 19.06 |
| AT3G52680.1 | Thale cress | cytosol | 33.95 | 16.23 |
| AT4G00160.1 | Thale cress | cytosol | 33.49 | 16.11 |
| AT3G49020.1 | Thale cress | cytosol, nucleus, plasma membrane | 31.65 | 15.44 |
| AT3G51530.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 31.65 | 15.16 |
| AT3G26920.3 | Thale cress | cytosol | 23.39 | 15.0 |
| AT2G04230.1 | Thale cress | cytosol | 30.28 | 14.73 |
| AT4G13965.1 | Thale cress | endoplasmic reticulum, peroxisome | 28.44 | 14.66 |
| AT3G49030.1 | Thale cress | cytosol | 28.44 | 14.0 |
| AT1G55030.2 | Thale cress | cytosol | 26.61 | 13.43 |
| AT4G26340.1 | Thale cress | cytosol | 21.56 | 11.22 |
| AT3G26930.2 | Thale cress | extracellular, peroxisome, plastid | 22.48 | 10.79 |
| AT4G26350.1 | Thale cress | cytosol | 20.64 | 10.44 |
| AT3G26922.2 | Thale cress | cytosol | 12.84 | 9.15 |
| CDY37901 | Canola | cytosol | 7.34 | 6.53 |
| CDY30423 | Canola | extracellular, golgi | 6.42 | 6.42 |
| CDY41819 | Canola | cytosol | 1.83 | 5.63 |
| AT3G49040.1 | Thale cress | cytosol | 7.8 | 5.47 |
Protein Annotations
| ArrayExpress:AT3G55670 | EnsemblPlants:AT3G55670.1 | EnsemblPlantsGene:AT3G55670 | EntrezGene:824733 | GO:GO:0005575 | GO:GO:0008150 |
| InterPro:FBD | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF234 | PFAM:PF08387 | ProteinID:AEE79419.1 | ProteinID:CAB81592.1 |
| RefSeq:AT3G55670 | RefSeq:AT3G55670-TAIR-G | RefSeq:NP_191126.1 | SEG:seg | SMART:SM00579 | TAIR:AT3G55670 |
| TAIR:AT3G55670.1 | Unigene:At.53940 | UniParc:UPI00000A44FC | UniProt:Q9M055 | MapMan:35.1 | : |
Description
F-box/FBD/LRR protein [Source:UniProtKB/TrEMBL;Acc:Q9M055]
Coordinates
chr3:-:20658013..20659503
Molecular Weight (calculated)
25390.5 Da
IEP (calculated)
9.079
GRAVY (calculated)
-0.539
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLENQSETT ANIQLNAPEL VEANIAEVTS ITIEKFLGSF TSVTRLLLNL SPLKNFHKDG LVSGKWNEPK DVPECLLSQL ETFVWRRLDW GREEEKEIAT
101: YILKNGRRLK KETFTTNPIE SEGLNKLKER LKVLNGLDGV QAPLFRKDGV VVGKWNQPKN VPQCLLSHLE TFVWTRYRWE REEEKEEATY ILKNARLLSK
201: ATFSTNIIDL KEFHWFKK
101: YILKNGRRLK KETFTTNPIE SEGLNKLKER LKVLNGLDGV QAPLFRKDGV VVGKWNQPKN VPQCLLSHLE TFVWTRYRWE REEEKEEATY ILKNARLLSK
201: ATFSTNIIDL KEFHWFKK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.