Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- plasma membrane 2
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13667 | Canola | extracellular, plasma membrane | 45.0 | 55.23 |
| AT3G52690.1 | Thale cress | extracellular, plasma membrane | 43.53 | 49.5 |
| AT3G49045.1 | Thale cress | cytosol | 16.47 | 47.46 |
| Bra025236.1-P | Field mustard | cytosol | 44.71 | 41.3 |
| AT4G13965.1 | Thale cress | endoplasmic reticulum, peroxisome | 51.18 | 41.13 |
| CDX83661 | Canola | cytosol, mitochondrion, nucleus | 47.94 | 40.75 |
| CDX83662 | Canola | cytosol, plastid | 48.53 | 39.86 |
| AT3G26930.2 | Thale cress | extracellular, peroxisome, plastid | 52.94 | 39.65 |
| AT1G55030.2 | Thale cress | cytosol | 47.94 | 37.73 |
| AT3G49020.1 | Thale cress | cytosol, nucleus, plasma membrane | 49.12 | 37.36 |
| AT3G49030.1 | Thale cress | cytosol | 48.24 | 37.02 |
| AT3G52680.1 | Thale cress | cytosol | 48.53 | 36.18 |
| AT2G04230.1 | Thale cress | cytosol | 46.47 | 35.27 |
| AT4G00160.1 | Thale cress | cytosol | 46.18 | 34.66 |
| AT3G26922.2 | Thale cress | cytosol | 31.18 | 34.64 |
| AT3G51530.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 45.29 | 33.85 |
| AT4G26340.1 | Thale cress | cytosol | 39.12 | 31.74 |
| AT3G49040.1 | Thale cress | cytosol | 27.65 | 30.23 |
| AT4G26350.1 | Thale cress | cytosol | 31.47 | 24.83 |
| AT3G55670.1 | Thale cress | cytosol | 15.0 | 23.39 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:822308 | UniProt:A0A1I9LRV1 | ProteinID:ANM65309.1 | ArrayExpress:AT3G26920 |
| EnsemblPlantsGene:AT3G26920 | RefSeq:AT3G26920 | TAIR:AT3G26920 | RefSeq:AT3G26920-TAIR-G | EnsemblPlants:AT3G26920.3 | Unigene:At.47875 |
| InterPro:FBD | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_001327287.1 | RefSeq:NP_189327.5 |
| PFAM:PF07723 | PFAM:PF08387 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF234 | SMART:SM00579 | SUPFAM:SSF52047 |
| UniParc:UPI0001A7B070 | SEG:seg | : | : | : | : |
Description
FBD / Leucine Rich Repeat domains containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRV1]
Coordinates
chr3:+:9920429..9922642
Molecular Weight (calculated)
39293.0 Da
IEP (calculated)
5.013
GRAVY (calculated)
0.178
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFGCDPRIM DFEILIGIAF GRQLRKLVLK VYSGDWFKFP TSLYNSETLE TLELYHCILI DVPFPVCLKS LRTLNLHEVE FVNDESVVNL LAGCISLENL
101: VIHQTTDLNV KTFTIAVPSL QRLTVIVEYY EEFSVFVVNT PSLKYLKIEG IIVDDRTCII ENTPELVEAS IIDVSFKVFE SILGSLASVQ RLSLKVSLVE
201: IFSLPPISNT FYHLTYLELS TYKPKWWNLL TLMLDTSPNL QVLKIFDFMT SQEQRPWEKW NEPKNVPECL LLHLETFVWT CYEGKLENEI ELAKYILRNA
301: RRLKKATFSI IEINPDKRVE MVGELKSVVR ASNSCQLVFI
101: VIHQTTDLNV KTFTIAVPSL QRLTVIVEYY EEFSVFVVNT PSLKYLKIEG IIVDDRTCII ENTPELVEAS IIDVSFKVFE SILGSLASVQ RLSLKVSLVE
201: IFSLPPISNT FYHLTYLELS TYKPKWWNLL TLMLDTSPNL QVLKIFDFMT SQEQRPWEKW NEPKNVPECL LLHLETFVWT CYEGKLENEI ELAKYILRNA
301: RRLKKATFSI IEINPDKRVE MVGELKSVVR ASNSCQLVFI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.