Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019575.1-P | Field mustard | cytosol | 39.87 | 52.54 |
| AT3G26922.2 | Thale cress | cytosol | 49.2 | 50.0 |
| AT3G49020.1 | Thale cress | cytosol, nucleus, plasma membrane | 58.84 | 40.94 |
| AT2G04230.1 | Thale cress | cytosol | 55.95 | 38.84 |
| AT3G49030.1 | Thale cress | cytosol | 52.41 | 36.79 |
| AT4G13965.1 | Thale cress | endoplasmic reticulum, peroxisome | 45.66 | 33.57 |
| AT4G00160.1 | Thale cress | cytosol | 47.91 | 32.89 |
| AT3G52680.1 | Thale cress | cytosol | 47.59 | 32.46 |
| AT3G26930.2 | Thale cress | extracellular, peroxisome, plastid | 46.62 | 31.94 |
| AT3G51530.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 46.3 | 31.65 |
| AT1G55030.2 | Thale cress | cytosol | 39.87 | 28.7 |
| AT4G26340.1 | Thale cress | cytosol | 37.94 | 28.16 |
| AT3G52690.1 | Thale cress | extracellular, plasma membrane | 26.69 | 27.76 |
| AT3G26920.3 | Thale cress | cytosol | 30.23 | 27.65 |
| AT4G26350.1 | Thale cress | cytosol | 32.8 | 23.67 |
| AT3G55670.1 | Thale cress | cytosol | 5.47 | 7.8 |
| AT3G49045.1 | Thale cress | cytosol | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:28719391 | Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A0A2H1ZEK7 | ProteinID:AEE78490.2 | ArrayExpress:AT3G49040 |
| EnsemblPlantsGene:AT3G49040 | RefSeq:AT3G49040 | TAIR:AT3G49040 | RefSeq:AT3G49040-TAIR-G | EnsemblPlants:AT3G49040.1 | TAIR:AT3G49040.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_001319714.1 | PFAM:PF00646 |
| PFAM:PF07723 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF234 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0008491A05 |
Description
F-box/RNI-like superfamily protein [Source:TAIR;Acc:AT3G49040]
Coordinates
chr3:+:18177482..18178839
Molecular Weight (calculated)
35842.5 Da
IEP (calculated)
7.705
GRAVY (calculated)
0.005
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQLCGGDCL RLFENEDRIS ELHEALLVHI MSSLPTKTVV ATSVLSKRWR HVWKTVQNLK FVSKYHQTFS EDVYRFFMLH KAPFLESLDL EFSNQLDASD
101: LGILVGIAFA RHVRNLVLDL DYYSNFSQLC AARFPSGLCI YDNNKTLETL TLKHSILLYF PYRVCLKSLR KLHLYKVHFY GKDSVYNLLC GCPSLRDLIV
201: HRYRECMETF TIAVPSLERL TIEDSGFGYG CCYVINAPSL KYLNIRRFKY LNSCLIEKAP ELAEAKVSDV SDIENENILE SLTSAKRLSI HLSPLEIKYP
301: SGSIFHQLLS L
101: LGILVGIAFA RHVRNLVLDL DYYSNFSQLC AARFPSGLCI YDNNKTLETL TLKHSILLYF PYRVCLKSLR KLHLYKVHFY GKDSVYNLLC GCPSLRDLIV
201: HRYRECMETF TIAVPSLERL TIEDSGFGYG CCYVINAPSL KYLNIRRFKY LNSCLIEKAP ELAEAKVSDV SDIENENILE SLTSAKRLSI HLSPLEIKYP
301: SGSIFHQLLS L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.