Factsheet for Bra019575.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G49040.1	Thale cress	cytosol	52.54	39.87
Bra006939.1-P	Field mustard	cytosol	43.22	30.91
AT3G49020.1	Thale cress	cytosol, nucleus, plasma membrane	55.08	29.08
Bra015355.1-P	Field mustard	cytosol, extracellular, nucleus	34.32	23.28
Bra023272.1-P	Field mustard	cytosol	36.02	22.85
Bra025236.1-P	Field mustard	cytosol	35.59	22.83
Bra034248.1-P	Field mustard	golgi, mitochondrion, plasma membrane	41.53	22.37
Bra019111.1-P	Field mustard	cytosol	33.47	21.01
Bra040480.1-P	Field mustard	cytosol	47.46	20.48
Bra026459.1-P	Field mustard	cytosol, nucleus, plastid	35.59	19.22
Bra026446.1-P	Field mustard	cytosol	33.9	19.18
Bra007575.1-P	Field mustard	extracellular, vacuole	31.78	17.01
Bra007397.1-P	Field mustard	cytosol	30.51	16.67
AT3G49045.1	Thale cress	cytosol	0.0	0.0
Bra034324.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra019575.1	EnsemblPlants:Bra019575.1-P	EnsemblPlantsGene:Bra019575	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SUPFAM:SSF52047	UniParc:UPI000253EF8B	UniProt:M4DST2	MapMan:35.1

Description

AT3G49020 (E=6e-065) | F-box family protein

Coordinates

chrA06:-:12084611..12085555

Molecular Weight (calculated)

27192.5 Da

IEP (calculated)

8.002

GRAVY (calculated)

0.237

Length

236 amino acids

Sequence
(BLAST)

001: MVPNLKFDSY SFSEHVYKSL ALHKAPFLKS LHLKVKHERD ASDVGIWIGV AFARKVRQLV LSVFFMKDSF VRFPSVLCSW NDTLVFLKLK HSILLNFPSR
101: VCLMSLRKLH LHYVMFNDEE SVCPRLEDLI IRGSYVDVKT FTIDVPSLQR LIMEEDNLVE RDGGRYVIKA PSLKYLKMSG FVGREVLLIE NSPELVEAEI
201: IDIYNIANEN ILVFLTSAIW FCLHLSPLEV KNSVIA

Best Arabidopsis Sequence Match ( AT3G49040.1 )
(BLAST)

001: MEQLCGGDCL RLFENEDRIS ELHEALLVHI MSSLPTKTVV ATSVLSKRWR HVWKTVQNLK FVSKYHQTFS EDVYRFFMLH KAPFLESLDL EFSNQLDASD
101: LGILVGIAFA RHVRNLVLDL DYYSNFSQLC AARFPSGLCI YDNNKTLETL TLKHSILLYF PYRVCLKSLR KLHLYKVHFY GKDSVYNLLC GCPSLRDLIV
201: HRYRECMETF TIAVPSLERL TIEDSGFGYG CCYVINAPSL KYLNIRRFKY LNSCLIEKAP ELAEAKVSDV SDIENENILE SLTSAKRLSI HLSPLEIKYP
301: SGSIFHQLLS L

Arabidopsis Description

F-box/RNI-like superfamily protein [Source:TAIR;Acc:AT3G49040]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.