Factsheet for Bra026446.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89345	Canola	cytosol, peroxisome, plastid	96.4	96.63
AT4G26340.1	Thale cress	cytosol	63.79	63.48
Bra019111.1-P	Field mustard	cytosol	51.08	56.65
Bra007575.1-P	Field mustard	extracellular, vacuole	47.0	44.44
Bra007397.1-P	Field mustard	cytosol	44.12	42.59
Bra026459.1-P	Field mustard	cytosol, nucleus, plastid	37.89	36.16
Bra025236.1-P	Field mustard	cytosol	31.89	36.14
Bra006939.1-P	Field mustard	cytosol	28.06	35.45
Bra034324.1-P	Field mustard	cytosol	9.59	34.78
Bra015355.1-P	Field mustard	cytosol, extracellular, nucleus	29.02	34.77
Bra019575.1-P	Field mustard	cytosol	19.18	33.9
Bra034248.1-P	Field mustard	golgi, mitochondrion, plasma membrane	34.53	32.88
Bra023272.1-P	Field mustard	cytosol	28.54	31.99
Bra040480.1-P	Field mustard	cytosol	37.89	28.88

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra026446	EnsemblPlants:Bra026446.1	EnsemblPlants:Bra026446.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	UniProt:M4ECD7	PFAM:PF00646	PFAM:PF07723
PFAM:PF08387	PANTHER:PTHR32212	SMART:SM00256	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0002547184	SEG:seg	:	:	:	:

Description

AT4G26340 (E=4e-132) | F-box family protein

Coordinates

chrA01:+:9268532..9269956

Molecular Weight (calculated)

46703.5 Da

IEP (calculated)

5.424

GRAVY (calculated)

0.095

Length

417 amino acids

Sequence
(BLAST)

001: MDIISALSDD LLLRILSFVP TKHVVATSLL SKRWESLWTS VSKLAYDDSD HTGDYKNFSQ FVYRSLLSNN APVLDKLHLK LGPDCPFIDV DLWTNIALTR
101: RVRELEIDLF SKEESFNLPN SLYTSETLEI LTLISCVVVN APSSVCLPSL KTLKLDRVDY TDNATLPRLL SGCPNLEVLF LERHVGDETT DSIVVAPSLQ
201: RLTMLDTHAG TCGRFVVDVP SLKHLEITDS VAYYDLRRME NMPVLEKACV WITSSGVTQE FLNALTSVHR LSLSLSLSKV MHPSGMTFNQ LVHLDLYTLT
301: EGWWGLLICM LLDSPKLRFL RLSNNKLTSE SKEIPIGWSP PSCSVPECLV SSLEAFVWIG YNGRQDSKMA IYLLKNTACL KTATFSPDST DLAEKYQMLK
401: VLASVATMST SSQLLFD

Best Arabidopsis Sequence Match ( AT4G26340.1 )
(BLAST)

001: MDRISQLSDD LLLQILSFIP GKDVVATSLL SKRWQSLWML VSELEYDDSY HTGDYKSFSQ FVYRSLLSNN APVIKHLHLN LGPDCPAIDI GLWIGFALTR
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD

Arabidopsis Description

F-box/FBD/LRR-repeat protein At4g26340 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1R7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.