Factsheet for Bra007575.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

nucleus 2
plasma membrane 4
extracellular 4
endoplasmic reticulum 3
vacuole 4
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52334	Canola	cytosol, nucleus, vacuole	99.09	99.09
Bra007397.1-P	Field mustard	cytosol	63.95	65.28
Bra026446.1-P	Field mustard	cytosol	44.44	47.0
Bra019111.1-P	Field mustard	cytosol	39.0	45.74
AT4G26350.1	Thale cress	cytosol	41.95	42.92
Bra026459.1-P	Field mustard	cytosol, nucleus, plastid	34.24	34.55
Bra025236.1-P	Field mustard	cytosol	27.89	33.42
Bra034248.1-P	Field mustard	golgi, mitochondrion, plasma membrane	32.88	33.1
Bra006939.1-P	Field mustard	cytosol	24.26	32.42
Bra019575.1-P	Field mustard	cytosol	17.01	31.78
Bra034324.1-P	Field mustard	cytosol	8.16	31.3
Bra015355.1-P	Field mustard	cytosol, extracellular, nucleus	23.81	30.17
Bra023272.1-P	Field mustard	cytosol	24.72	29.3
Bra040480.1-P	Field mustard	cytosol	32.43	26.14

Protein Annotations

EnsemblPlants:Bra007575.1	EnsemblPlants:Bra007575.1-P	EnsemblPlantsGene:Bra007575	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	PANTHER:PTHR32212	PFAM:PF00646
PFAM:PF08387	SEG:seg	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000254293C
UniProt:M4CTN1	MapMan:35.1	:	:	:	:

Description

AT4G26340 (E=3e-090) | F-box family protein

Coordinates

chrA09:+:29854992..29856490

Molecular Weight (calculated)

50678.3 Da

IEP (calculated)

5.171

GRAVY (calculated)

0.028

Length

441 amino acids

Sequence
(BLAST)

001: MDMISQLSDD LLIRILLLVP TKHVMATCCL SKRWLLLWSL VPKLDYDDSS YSDENYATFT QFVYRSLMSN KAPVLESLSL TLGPKCQAVD VGRWIETAVC
101: HRVHALILNY TLPYEEETML SLPSSIYTCE TLETLKLSDC FSLDDIPFSV CLPSLKTLEI INVEVSSLTR LLSGCPNLDS LVVDQEDIDV DIVVPSLRKL
201: NMVNYTGGQK GSGFVIDARS LVGLYIKDDV FNDYHRIEYM PKLEKAYVDI TCGVRDHKFL KAFTCARKLS LCLSFLEVLS PRSMIFHNLV YLTLNTCVLG
301: WWDLVTHMLQ DSPKLRFLKL HDEHDLLLTS IEPPDCWKPP SSVPKCLLHT FEAFEWYGYK GRRGDVVMAT YLIEHATWLK EATFFSEESD DKRDRMLEDF
401: TSVAAPSPCF TFYWSWSSDQ GMTYSGYLLR KNKLLGWCYW V

Best Arabidopsis Sequence Match ( AT4G26340.1 )
(BLAST)

001: MDRISQLSDD LLLQILSFIP GKDVVATSLL SKRWQSLWML VSELEYDDSY HTGDYKSFSQ FVYRSLLSNN APVIKHLHLN LGPDCPAIDI GLWIGFALTR
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD

Arabidopsis Description

F-box/FBD/LRR-repeat protein At4g26340 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1R7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.