Factsheet for Bra007397.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06036	Canola	cytosol	100.0	100.0
Bra007575.1-P	Field mustard	extracellular, vacuole	65.28	63.95
Bra019111.1-P	Field mustard	cytosol	38.43	44.15
Bra026446.1-P	Field mustard	cytosol	42.59	44.12
AT4G26350.1	Thale cress	cytosol	41.9	42.0
Bra026459.1-P	Field mustard	cytosol, nucleus, plastid	33.56	33.18
Bra006939.1-P	Field mustard	cytosol	24.31	31.82
Bra034248.1-P	Field mustard	golgi, mitochondrion, plasma membrane	31.94	31.51
Bra025236.1-P	Field mustard	cytosol	26.62	31.25
Bra019575.1-P	Field mustard	cytosol	16.67	30.51
Bra015355.1-P	Field mustard	cytosol, extracellular, nucleus	24.31	30.17
Bra023272.1-P	Field mustard	cytosol	23.61	27.42
Bra034324.1-P	Field mustard	cytosol	7.18	26.96
Bra040480.1-P	Field mustard	cytosol	31.48	24.86

Protein Annotations

EnsemblPlants:Bra007397.1	EnsemblPlants:Bra007397.1-P	EnsemblPlantsGene:Bra007397	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	PANTHER:PTHR32212	PFAM:PF00646	PFAM:PF08387	SMART:SM00579	SUPFAM:SSF52058
SUPFAM:SSF81383	UniParc:UPI0002542DD9	UniProt:M4CT55	MapMan:35.1	:	:

Description

AT4G26340 (E=2e-107) | F-box family protein

Coordinates

chrA09:-:28993602..28995071

Molecular Weight (calculated)

49507.8 Da

IEP (calculated)

6.898

GRAVY (calculated)

-0.139

Length

432 amino acids

Sequence
(BLAST)

001: MDMISQLSDD LLIRILSRVP TKHVMATCCL SKRWLRLWSL VPKLDYADCS YSNENYATFT QFVYRSLMSN KAPVLETLDL NLGSKCQAID VGNWIETAVV
101: CHRVQAIIAI IHPSNERGTM ISLPSSMYTC ETLETLELYD CFRLDVPFSV RLPSLKTLKL VDVDYADNKV SSLTRLLSGC PNLDFLLVHH DNLDVALMVP
201: PSLGKLIMYN NGRNQKGSGF VIDAPSLVWL YVRDDVLYDF HQIEHMPNLE VAHVEMTFAV RNHKFLKAFT CARSLTLCLS FLEVLSPCGM IFHNLVDLTL
301: NTCAQGWWDL VTRMLQDSPK LRSLKLTDEH QLEFTSIETP ESWKRPSSVP ECFLHSFEIF EWKGYKGRRG DLDMATYVIT NATRLKKSKF SSQPHDDSEG
401: DRIHRDLNSL QAASPHLMFL SQERNKRQRV ET

Best Arabidopsis Sequence Match ( AT4G26340.1 )
(BLAST)

001: MDRISQLSDD LLLQILSFIP GKDVVATSLL SKRWQSLWML VSELEYDDSY HTGDYKSFSQ FVYRSLLSNN APVIKHLHLN LGPDCPAIDI GLWIGFALTR
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD

Arabidopsis Description

F-box/FBD/LRR-repeat protein At4g26340 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1R7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.