Factsheet for Bra026459.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	81.69	98.08
CDX94363	Canola	cytosol	77.8	93.41
Bra025236.1-P	Field mustard	cytosol	35.01	41.58
Bra015355.1-P	Field mustard	cytosol, extracellular, nucleus	32.49	40.8
Bra034248.1-P	Field mustard	golgi, mitochondrion, plasma membrane	40.73	40.64
Bra023272.1-P	Field mustard	cytosol	33.87	39.78
Bra026446.1-P	Field mustard	cytosol	36.16	37.89
Bra034324.1-P	Field mustard	cytosol	9.38	35.65
Bra019575.1-P	Field mustard	cytosol	19.22	35.59
Bra019111.1-P	Field mustard	cytosol	29.98	34.84
Bra006939.1-P	Field mustard	cytosol	26.09	34.55
Bra007575.1-P	Field mustard	extracellular, vacuole	34.55	34.24
Bra040480.1-P	Field mustard	cytosol	42.33	33.82
Bra007397.1-P	Field mustard	cytosol	33.18	33.56

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra026459	EnsemblPlants:Bra026459.1	EnsemblPlants:Bra026459.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	UniProt:M4ECF0	PFAM:PF00646	PFAM:PF07723
PFAM:PF08387	PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00579	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0002547178	SEG:seg	:	:	:

Description

AT3G52680 (E=1e-068) | F-box family protein

Coordinates

chrA01:-:9174325..9176282

Molecular Weight (calculated)

50999.1 Da

IEP (calculated)

9.235

GRAVY (calculated)

-0.322

Length

437 amino acids

Sequence
(BLAST)

001: MNPNFSRRHS NKKRRRVDEK ADRISDLPDA LLLLILSLIP TVDVVRTCVL SKRWTSLWEH VPKLDYSYKT DKKMSHQFVH RFLISRKPCL LESMRLIVGS
101: HCEAINIPIW IKYAVEHGLR ELELDPYSEK GNIRLPSNIY ACKTLEVLTL KYCVHVDVPN TPVCFKSLKI LKLQLVHFKN DESVRRLFSS CPNLEKLDVK
201: RYVDNVVNFT IEVPSLKSLT IHDCSDGDGR RGYVINAPSL NYFSIKGMKD YEFSIENMPE LKEAKIIDVF DINTEKILLP LASSVKRLSL SLSPLETRYA
301: DSTVYSQLVY LELSTSKTEW WNLLMVLLLN SSKLQVLKLT RDEPKKSHTE RMSNPQFYKP VNVPPCLLFC LQRFEWERYN GLHEEERQVA MYIPTNAKHL
401: KEARFSTKNR GLEEKFEMLK VLARESRASP SCQFFFE

Best Arabidopsis Sequence Match ( AT3G52680.1 )
(BLAST)

001: MISPTMEQGE SLRIRVVMGK DRISELPDGL LLKILSSLPT NIVVATSVLS KQWRSLWKLV PNLEFDSDDY ESEHYTFSEI VCKSFLSHKA PVLESFRLKF
101: VNFNPVDIGL WVGIAFSRHL RELVLDFYPA ELGKGVTFTF PSSLCTCNTL ETLKLVLCIL VDIPSPVLMK SLRTLHLEFV RYKDESSVRN LLSGCPGLEE
201: LRLYRGDDSD IKVFTIEVPS LQRLTIHDNN DGPEFWGYVI NAPFLKYLLI EELRCPEFCL NAPELVEANI AEVTSITIEK FLGSFTSVSR LLLNLSPLKI
301: TYPTGSMFYQ LVSLEMYTRE AEWWNLLTLM LENSPKLQVL KLTDRSQNFH KDGLVSGKWN EPKDVPECLL SQLETFVWRR FDWGREEEKE IATYILKNGR
401: RLKKATFSTN PIESEELNKL KERRKVLNGL DGVVRASNSC QLVFKFDPSY LGSDSP

Arabidopsis Description

F-box/FBD/LRR-repeat protein At3g52680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXJ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.