CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	94.23	94.23
Bra026459.1-P	Field mustard	cytosol, nucleus, plastid	93.41	77.8
CDY13667	Canola	extracellular, plasma membrane	31.32	41.16
CDX87122	Canola	cytosol	41.76	40.21
CDX89785	Canola	cytosol, extracellular, nucleus	37.09	38.79
CDX92766	Canola	cytosol	20.6	36.06
CDY48010	Canola	cytosol	43.41	35.19
CDY00182	Canola	cytosol	7.69	34.57
CDY00181	Canola	plasma membrane, plastid, vacuole	40.11	34.27
CDY48007	Canola	plastid	41.21	34.25
CDY48198	Canola	cytosol	10.71	33.91
CDY69654	Canola	cytosol	29.67	33.64
CDY37901	Canola	cytosol	22.53	33.47
CDX78112	Canola	cytosol	39.29	33.41
CDX83662	Canola	cytosol, plastid	37.91	33.33
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	38.19	33.17
CDX94344	Canola	cytosol, peroxisome, plastid	38.19	33.17
CDY69799	Canola	cytosol	34.89	33.07
CDX89345	Canola	cytosol, peroxisome, plastid	37.36	32.69
CDX83661	Canola	cytosol, mitochondrion, nucleus	35.71	32.5
CDX76220	Canola	endoplasmic reticulum, extracellular	13.19	31.79
CDY48199	Canola	extracellular, plasma membrane, vacuole	41.76	31.73
CDY63198	Canola	mitochondrion, plasma membrane	39.84	31.66
CDX92699	Canola	cytosol	27.2	31.63
CDX73615	Canola	cytosol	32.42	31.55
CDY72188	Canola	cytosol	36.81	31.24
CDY65463	Canola	cytosol, extracellular, nucleus	13.74	30.86
CDY01270	Canola	extracellular, plasma membrane	24.45	30.8
CDY23230	Canola	cytosol	36.26	30.77
CDY23229	Canola	cytosol	36.26	30.77
CDY65306	Canola	cytosol	26.92	30.25
CDY37900	Canola	cytosol, extracellular, nucleus	10.71	30.23
CDX95363	Canola	cytosol	34.62	30.07
CDY42742	Canola	cytosol	34.34	29.69
CDX88297	Canola	cytosol	18.41	28.51
CDY52334	Canola	cytosol, nucleus, vacuole	33.79	27.89
CDY65918	Canola	cytosol	32.42	27.57
CDY06036	Canola	cytosol	31.87	26.85
CDX80649	Canola	cytosol	31.87	26.85
CDY27513	Canola	cytosol	40.66	25.56
CDY00432	Canola	cytosol	15.66	22.8
CDX92764	Canola	cytosol, nucleus, plasma membrane	13.74	19.76
CDX71951	Canola	plastid	28.3	19.43
CDX71950	Canola	cytosol	5.77	15.79
CDY30423	Canola	extracellular, golgi	9.34	15.6
CDY41819	Canola	cytosol	1.92	9.86

Protein Annotations

EnsemblPlants:CDX94363	EnsemblPlantsGene:GSBRNA2T00157482001	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	PFAM:PF07723	PFAM:PF08387	ProteinID:CDX94363
ProteinID:CDX94363.1	SEG:seg	SMART:SM00579	SUPFAM:SSF52047	UniParc:UPI0004EEF6C7	MapMan:35.1

Description

BnaC01g18210D

Coordinates

chrLK031881:+:529885..531229

Molecular Weight (calculated)

42215.7 Da

IEP (calculated)

9.036

GRAVY (calculated)

-0.205

Length

364 amino acids

Sequence
(BLAST)

001: MSHQFVHRFL ISRKPCLLES MRLIVGSDCE GINVPIWIKY AVEHGLRELE LDPYSEKGNI RLPTSIYACK TLEVLTLKYC VHVDVPNTPV CFKSLKILNL
101: QLVHFKNAES VRRLFSSCPN LEKLDVKRYV DNVVNFTIEV PSLKSLTIHD CSDGDGRRGY VINAPSLKYF SIKGMKDYEF SIENMPELRE AKIIDVFDIN
201: TEKILRPLAS SVKRLSLSLS PLETRYADSI VLSQLVYLKL STSKIEWWNL LMVLLLNSSK LQVLKLTRDE PKKSHTGRMS NPQFYKPVNV PPCLLFCLQR
301: LEWERYNGLH DEERQIAMYI LTNAKHLKEA RFSTKNSDMK EKFEMLKVLA REPRASPSCQ FFFE

Best Arabidopsis Sequence Match ( AT3G49020.1 )
(BLAST)

001: MEQKCKIGGE GLRNRGLVNE EDRISELPEA LLLLILSSLP TETVIATSVL SKQWKSLWKL VPNLKFDSKY HYHYTFSDNV FRSLISHKAP VLDSLHLKVE
101: DKDDALDVGI LIGIAFSRHM RKFVLKITLL EESFVRFPSA WCSCNDTLEI LELKYCILLD FPSLVCLKSL RKLYLYHVRF NDEESVCNLL CGCPSLEDLV
201: VHRHSTTDVE SYTIAVPSLQ RLTIYDDYYG EGVGGYVINA PSLKYLNIDG FNGLEFCLIE KAPELVEAKI SAVFEIANEN IMDSLTSAKC LSLHLAPFKI
301: KYPTGKIFYQ LLSLELRAYS YEWWNLLWFM LDSSPKLQIL KLVDPYQFPK EDCSVGWEWS RPKCVPECLL FHLETFVWTR YEWQREDEKA VATYILKNAR
401: CLKKATLSTK PIGSEELEKL GKRREMLNEL ATQASPSNSC NLVFESE

Arabidopsis Description

FBD-associated F-box protein At3g49020 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMT9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.