CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48007	Canola	plastid	69.78	92.24
CDY48010	Canola	cytosol	53.2	68.6
CDY48198	Canola	cytosol	12.09	60.87
CDY69654	Canola	cytosol	31.26	56.39
CDY69799	Canola	cytosol	35.92	54.17
CDY48199	Canola	extracellular, plasma membrane, vacuole	41.97	50.73
CDY00432	Canola	cytosol	21.76	50.4
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	36.27	50.12
CDX73615	Canola	cytosol	32.12	49.73
CDX78112	Canola	cytosol	36.27	49.07
CDY01270	Canola	extracellular, plasma membrane	24.18	48.44
CDY00181	Canola	plasma membrane, plastid, vacuole	35.58	48.36
CDY37900	Canola	cytosol, extracellular, nucleus	10.54	47.29
CDY13667	Canola	extracellular, plasma membrane	22.28	46.57
CDY37901	Canola	cytosol	19.69	46.53
CDY63198	Canola	mitochondrion, plasma membrane	36.61	46.29
CDX83661	Canola	cytosol, mitochondrion, nucleus	31.78	46.0
CDX87122	Canola	cytosol	29.88	45.77
CDX83662	Canola	cytosol, plastid	32.47	45.41
CDY72188	Canola	cytosol	33.33	44.99
CDY23229	Canola	cytosol	33.33	44.99
CDY23230	Canola	cytosol	33.16	44.76
CDX89785	Canola	cytosol, extracellular, nucleus	26.77	44.54
CDX95363	Canola	cytosol	31.78	43.91
CDX88297	Canola	cytosol	17.1	42.13
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	26.25	41.76
CDX94363	Canola	cytosol	25.56	40.66
CDX76220	Canola	endoplasmic reticulum, extracellular	10.36	39.74
CDY00182	Canola	cytosol	5.53	39.51
CDY65918	Canola	cytosol	28.5	38.55
CDX92699	Canola	cytosol	20.55	38.02
CDX92766	Canola	cytosol	13.64	37.98
CDX94344	Canola	cytosol, peroxisome, plastid	27.12	37.47
CDY42742	Canola	cytosol	27.12	37.29
CDY65306	Canola	cytosol	20.73	37.04
CDX89345	Canola	cytosol, peroxisome, plastid	26.42	36.78
CDX71950	Canola	cytosol	7.77	33.83
CDY52334	Canola	cytosol, nucleus, vacuole	25.22	33.11
CDX80649	Canola	cytosol	24.7	33.1
CDY65463	Canola	cytosol, extracellular, nucleus	9.15	32.72
CDY06036	Canola	cytosol	24.01	32.18
CDX92764	Canola	cytosol, nucleus, plasma membrane	10.36	23.72
CDX71951	Canola	plastid	20.55	22.45
CDY30423	Canola	extracellular, golgi	7.25	19.27
CDY41819	Canola	cytosol	1.73	14.08

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078GSE4	EnsemblPlants:CDY27513	ProteinID:CDY27513	ProteinID:CDY27513.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00038188001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646
PFAM:PF07723	PFAM:PF08387	PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00256
SMART:SM00579	SUPFAM:SSF52058	SUPFAM:SSF81383	UniParc:UPI0004EDF160	SEG:seg	:

Description

BnaC04g51540DBnaC04g51540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSE4]

Coordinates

chrLK032205:+:455789..459217

Molecular Weight (calculated)

66580.3 Da

IEP (calculated)

7.895

GRAVY (calculated)

-0.051

Length

579 amino acids

Sequence
(BLAST)

001: MEHGGYNTST PDVFVLFEAA PSFPFFQVMR ERERDICRFG EIIRNVVQWW MNQSMTRARR CNTCVTAKFD NFSSRNIYLI SLKKLSAFSA FSISLSSEII
101: WIEFHDFLQI LSPKTLIYIY LNPDSKTCGE NLRNQDVLNE DRISELPEAL LMQILSSLAT KNVIATSVLS KRWRSLWKKV PSIKFDSWYH KTESHRFSEI
201: VSKSLLSYNS PVLDSFYLVD ICVSEASDDI TIWIGIAFAH HVRKLVLKLL LDETYYGNLI TFPSAFCNCN NTLDTLEISK LFLLDFPSRV GLKSLKKLHL
301: RYANFRDDES VCNLLCGCPS LEDLVVQRRG SYDGVITFTI AVPSLQRLTI VDTFRGTCRG GYAINAPSLK YLNIKGSYGF CLIENAPELV EAKITGFTDI
401: NLHNENIFVS LTSAKRLSFD FSPFKIKCPT GITFSQLVSL ELNTRKSEWS ILLARMLDSS PRLQILKLVN IAYLYHDNKV STFPLAGDWE QRPKCVPECL
501: LFHLETLIWT GYIWDRKDDR EVATYILKKA RHLKKATFYT EPIQLEYFQT LEEKHEMLNE LASVVRASSS CHLVFESSN

Best Arabidopsis Sequence Match ( AT3G49020.1 )
(BLAST)

001: MEQKCKIGGE GLRNRGLVNE EDRISELPEA LLLLILSSLP TETVIATSVL SKQWKSLWKL VPNLKFDSKY HYHYTFSDNV FRSLISHKAP VLDSLHLKVE
101: DKDDALDVGI LIGIAFSRHM RKFVLKITLL EESFVRFPSA WCSCNDTLEI LELKYCILLD FPSLVCLKSL RKLYLYHVRF NDEESVCNLL CGCPSLEDLV
201: VHRHSTTDVE SYTIAVPSLQ RLTIYDDYYG EGVGGYVINA PSLKYLNIDG FNGLEFCLIE KAPELVEAKI SAVFEIANEN IMDSLTSAKC LSLHLAPFKI
301: KYPTGKIFYQ LLSLELRAYS YEWWNLLWFM LDSSPKLQIL KLVDPYQFPK EDCSVGWEWS RPKCVPECLL FHLETFVWTR YEWQREDEKA VATYILKNAR
401: CLKKATLSTK PIGSEELEKL GKRREMLNEL ATQASPSNSC NLVFESE

Arabidopsis Description

FBD-associated F-box protein At3g49020 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMT9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.