CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48198	Canola	cytosol	21.18	59.13
CDY69799	Canola	cytosol	66.04	55.21
CDY48199	Canola	extracellular, plasma membrane, vacuole	71.03	47.6
CDY00182	Canola	cytosol	11.53	45.68
AT3G49030.1	Thale cress	cytosol	59.19	42.89
AT2G04230.1	Thale cress	cytosol	59.5	42.63
CDY01270	Canola	extracellular, plasma membrane	36.45	40.48
CDY37900	Canola	cytosol, extracellular, nucleus	15.89	39.53
CDY48010	Canola	cytosol	54.83	39.2
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	51.09	39.14
CDY48007	Canola	plastid	52.34	38.36
CDY00432	Canola	cytosol	29.28	37.6
CDX88297	Canola	cytosol	27.41	37.45
CDY00181	Canola	plasma membrane, plastid, vacuole	48.91	36.85
CDX78112	Canola	cytosol	48.29	36.22
CDY63198	Canola	mitochondrion, plasma membrane	50.47	35.37
CDX87122	Canola	cytosol	41.12	34.92
CDX95363	Canola	cytosol	45.48	34.84
CDX83662	Canola	cytosol, plastid	44.86	34.78
CDX83661	Canola	cytosol, mitochondrion, nucleus	42.99	34.5
CDX73615	Canola	cytosol	40.19	34.49
CDX76220	Canola	endoplasmic reticulum, extracellular	16.2	34.44
CDY23229	Canola	cytosol	45.79	34.27
CDY23230	Canola	cytosol	45.48	34.03
CDY72188	Canola	cytosol	45.48	34.03
CDY13667	Canola	extracellular, plasma membrane	28.35	32.85
CDY37901	Canola	cytosol	24.61	32.24
CDX92766	Canola	cytosol	20.87	32.21
CDX89785	Canola	cytosol, extracellular, nucleus	34.89	32.18
CDY27513	Canola	cytosol	56.39	31.26
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	33.96	29.95
CDX94363	Canola	cytosol	33.64	29.67
CDY65463	Canola	cytosol, extracellular, nucleus	14.64	29.01
CDY65918	Canola	cytosol	38.63	28.97
CDX94344	Canola	cytosol, peroxisome, plastid	37.07	28.4
CDX89345	Canola	cytosol, peroxisome, plastid	35.2	27.16
CDY65306	Canola	cytosol	27.41	27.16
CDY42742	Canola	cytosol	35.51	27.08
CDX92699	Canola	cytosol	25.23	25.88
CDX80649	Canola	cytosol	33.64	25.0
CDY52334	Canola	cytosol, nucleus, vacuole	33.96	24.72
CDY06036	Canola	cytosol	33.02	24.54
CDX71950	Canola	cytosol	9.03	21.8
CDX71951	Canola	plastid	28.35	17.17
CDY30423	Canola	extracellular, golgi	10.59	15.6
CDX92764	Canola	cytosol, nucleus, plasma membrane	11.21	14.23
CDY41819	Canola	cytosol	1.87	8.45

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078JS36	EnsemblPlants:CDY69654	ProteinID:CDY69654
ProteinID:CDY69654.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00089587001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2
PFAM:PF00646	PFAM:PF07723	PFAM:PF08387	PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234
SMART:SM00256	SMART:SM00579	SUPFAM:SSF52058	SUPFAM:SSF81383	UniParc:UPI0004EC6915	:

Description

BnaCnng64650DBnaCnng64650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JS36]

Coordinates

chrLK039965:+:1786..3689

Molecular Weight (calculated)

36782.4 Da

IEP (calculated)

6.398

GRAVY (calculated)

-0.148

Length

321 amino acids

Sequence
(BLAST)

001: MNEDRISELP EALLLHILSY VPTKDVIATS VLSKRWRSLW KMVPKLEFEF DMEHVSSEAV YRKLHLYYVE FKDEESVCNL FSGCPRLQDL VVKRYSNANV
101: ETYSIAVPSL QRLTIEEDCS TDVNDGGYVI NAPSLKYLSI ECLGFIDFCL IENAPELVEA NIKNVSHIAN ENIIASLTSP KCLSFHLPLE IKCPTGSIFY
201: QLVSLELHIN EINGWNLLSF MLDSSPKLQI LKLFGSYRYR ERSPVSWEWT QPKCVPKCLL LHLETLVWTR YGWQREDEKQ VATYILKNAK QLKKATFYPT
301: CVGAETAGKV GKEARDAQRV G

Best Arabidopsis Sequence Match ( AT2G04230.1 )
(BLAST)

001: MEQKFKTDSM NEDRISDLPD ALLLQILSSL PTENAIATSV LSKRWRSLWT MLPKLKFDSN FNPVFDDDNI DPTMFSENVY KTLSLHKAPV LESLHLSFEG
101: RTDCLHVGIW IATAFARGVR KLVLDSFYQE DQTVTLPSVL FSYNDSLEIL KLKCAIDLDF PSRVCLKSLR KLYLDQVHFK DEESVCNLLC GCPSLQDLVV
201: HRYSNADVAT FTIASPSLQR LTIEDLRQEG GYGNGSYVIN APGLKYLNIN GVIDIESCLI DKALELEEAK ISNVSGITNE NILESLTSAK RLILHLSPLE
301: VKVPTGKIFD QLGCLELLTH EREWWNLLSI MLDSSPKLQI LKLTDVYLHD NKTNPDERKW NPPKCAPECL LFHLETFLWI GYEWQRGDEK EVATYILENA
401: RRLKKATFST KRIGREKLED FEKRREMLNE LAIVLWDSNS CHLVFEST

Arabidopsis Description

F-box/FBD/LRR-repeat protein At2g04230 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.