CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06036	Canola	cytosol	77.08	77.08
CDX71950	Canola	cytosol	22.45	72.93
CDY65306	Canola	cytosol	53.01	70.68
CDY52334	Canola	cytosol, nucleus, vacuole	62.73	61.45
CDX71951	Canola	plastid	59.49	48.49
CDY42742	Canola	cytosol	44.44	45.61
CDX94344	Canola	cytosol, peroxisome, plastid	43.98	45.35
CDX92699	Canola	cytosol	32.64	45.05
CDX89345	Canola	cytosol, peroxisome, plastid	42.59	44.23
CDX92766	Canola	cytosol	21.06	43.75
AT4G26350.1	Thale cress	cytosol	40.51	40.6
CDY65463	Canola	cytosol, extracellular, nucleus	14.58	38.89
CDX73615	Canola	cytosol	30.79	35.56
CDX78112	Canola	cytosol	33.56	33.88
CDY69654	Canola	cytosol	25.0	33.64
CDY00182	Canola	cytosol	6.25	33.33
CDX83661	Canola	cytosol, mitochondrion, nucleus	30.32	32.75
CDY01270	Canola	extracellular, plasma membrane	21.76	32.53
CDY00181	Canola	plasma membrane, plastid, vacuole	31.48	31.92
CDX83662	Canola	cytosol, plastid	30.56	31.88
CDX94363	Canola	cytosol	26.85	31.87
CDX87122	Canola	cytosol	27.55	31.48
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	26.39	31.32
CDY69799	Canola	cytosol	27.78	31.25
CDY48010	Canola	cytosol	32.41	31.18
CDY48007	Canola	plastid	31.48	31.05
CDY72188	Canola	cytosol	30.56	30.77
CDY23229	Canola	cytosol	30.56	30.77
CDY23230	Canola	cytosol	30.32	30.54
CDY00432	Canola	cytosol	17.59	30.4
CDY13667	Canola	extracellular, plasma membrane	19.44	30.32
CDX95363	Canola	cytosol	29.4	30.31
CDY37901	Canola	cytosol	17.13	30.2
CDX89785	Canola	cytosol, extracellular, nucleus	24.07	29.89
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	28.94	29.83
CDY63198	Canola	mitochondrion, plasma membrane	30.56	28.82
CDY48198	Canola	cytosol	7.64	28.7
CDY48199	Canola	extracellular, plasma membrane, vacuole	31.48	28.39
CDX88297	Canola	cytosol	15.05	27.66
CDY37900	Canola	cytosol, extracellular, nucleus	8.1	27.13
CDY65918	Canola	cytosol	26.16	26.4
CDX76220	Canola	endoplasmic reticulum, extracellular	8.8	25.17
CDY27513	Canola	cytosol	33.1	24.7
CDX92764	Canola	cytosol, nucleus, plasma membrane	14.35	24.51
CDY41819	Canola	cytosol	2.55	15.49
CDY30423	Canola	extracellular, golgi	7.41	14.68

Protein Annotations

EnsemblPlants:CDX80649	EnsemblPlantsGene:GSBRNA2T00133789001	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR32212	PFAM:PF08387	ProteinID:CDX80649	ProteinID:CDX80649.1	SMART:SM00579	SUPFAM:SSF52058
UniParc:UPI0004EE1CEA	MapMan:35.1	:	:	:	:

Description

BnaC07g27950D

Coordinates

chrLK031821:-:1829364..1830851

Molecular Weight (calculated)

49862.3 Da

IEP (calculated)

8.081

GRAVY (calculated)

-0.195

Length

432 amino acids

Sequence
(BLAST)

001: MDTISQLSDD LLIRILSRHW TKHVMATCCL SKRWLLLRSL VPRLNYDDRS FRDENYATFT QFVYRSLMSN KAPVLEALYL CLGPKSQAID VGNWIETAVV
101: CHRVQAISVD IRSSDEKGTM ISLPSSMYTC QTVETLDLYN RLRLDVPFSV RLPSLKKLTL ADVDYAENKV SSLTRLLSGC PNLDYLFLAH DNLDVALMVP
201: SLRILRMYNT GRYQKGGGFV IDAPSLVSLF IRDYVLYDFH RIEHMPNLEH AHVDITWAVR NHKFLKAFTC ARSLTLCLPF LEVLSPCGMI FHNLVDLKLN
301: TCAQGWWDLV TRMLEDSPNL KFLKLHDEHL LHEFTSIETP DSWKRPSSVP KCLLHSFETF EWEGYKGRRG DVDMATYIIT NATRLKKSNF SSQPRDDSDG
401: GRIHRDLNSL HAASPHLMFL TQERNKRQRL EI

Best Arabidopsis Sequence Match ( AT4G26350.1 )
(BLAST)

001: MDIISQCPDH LLLRILSFIP TKDVIVTSLL SKRWGSLWRW VPKLEYDFTR QNMRFVKFVY RSLLQNNAPV LESLHLKNII LYAECRTVDI GGWIDIAVSR
101: RVRELEISIN CSDEKFRLPS SLYTCGTLES FILTIKHCHL VDVPLAVCLP SLKKLHLRCI GWAYNATLLR LISGCTNLEE LRLARPDDDG DYIMIHEAGS
201: TIDYMSIFER RYMFEFMFDQ MFGKGSSNGI NAPLKYFSIS NNYRIHNFRG IEKMPDWVEA RIAVTGGSHK YLKEITYAKG LYVCLSVSEV MNPYDMIFHM
301: LVDLTICTCT QGWWDLLTHM LQGSPKLRFL TLTNDHCREL PSLETPACWK RPSSVPACLL SSLQAFTWSG YKGRQGDKEV VKYVLRNATG LKKRIFISKS
401: NDFGEKFCML QELASVPTPS PSCQLLFDRI F

Arabidopsis Description

Putative F-box/FBD/LRR-repeat protein At4g26350 [Source:UniProtKB/Swiss-Prot;Acc:Q9STQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.