Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92766 | Canola | cytosol | 37.65 | 29.33 |
| CDX94344 | Canola | cytosol, peroxisome, plastid | 52.47 | 20.29 |
| CDX89345 | Canola | cytosol, peroxisome, plastid | 51.85 | 20.19 |
| AT4G26340.1 | Thale cress | cytosol | 47.53 | 18.38 |
| CDY65306 | Canola | cytosol | 36.42 | 18.21 |
| CDY01270 | Canola | extracellular, plasma membrane | 30.86 | 17.3 |
| CDY00182 | Canola | cytosol | 8.64 | 17.28 |
| CDX88297 | Canola | cytosol | 22.22 | 15.32 |
| CDY42742 | Canola | cytosol | 38.89 | 14.96 |
| CDY69654 | Canola | cytosol | 29.01 | 14.64 |
| CDY06036 | Canola | cytosol | 38.89 | 14.58 |
| CDX80649 | Canola | cytosol | 38.89 | 14.58 |
| CDY52334 | Canola | cytosol, nucleus, vacuole | 38.89 | 14.29 |
| CDY69799 | Canola | cytosol | 33.33 | 14.06 |
| CDX73615 | Canola | cytosol | 32.1 | 13.9 |
| CDX89785 | Canola | cytosol, extracellular, nucleus | 29.63 | 13.79 |
| CDX94363 | Canola | cytosol | 30.86 | 13.74 |
| CDX89356 | Canola | cytosol, extracellular, mitochondrion, plastid | 30.25 | 13.46 |
| CDY48198 | Canola | cytosol | 9.26 | 13.04 |
| CDX87122 | Canola | cytosol | 30.25 | 12.96 |
| CDX76220 | Canola | endoplasmic reticulum, extracellular | 11.73 | 12.58 |
| CDX83661 | Canola | cytosol, mitochondrion, nucleus | 30.86 | 12.5 |
| CDY00181 | Canola | plasma membrane, plastid, vacuole | 32.1 | 12.21 |
| CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 31.48 | 12.17 |
| CDX78112 | Canola | cytosol | 32.1 | 12.15 |
| CDY48199 | Canola | extracellular, plasma membrane, vacuole | 35.8 | 12.11 |
| CDX71951 | Canola | plastid | 38.89 | 11.89 |
| CDY63198 | Canola | mitochondrion, plasma membrane | 33.33 | 11.79 |
| CDY48007 | Canola | plastid | 31.48 | 11.64 |
| CDY37900 | Canola | cytosol, extracellular, nucleus | 9.26 | 11.63 |
| CDY23230 | Canola | cytosol | 29.63 | 11.19 |
| CDY23229 | Canola | cytosol | 29.63 | 11.19 |
| CDY72188 | Canola | cytosol | 29.63 | 11.19 |
| CDY48010 | Canola | cytosol | 30.86 | 11.14 |
| CDX95363 | Canola | cytosol | 27.78 | 10.74 |
| CDY00432 | Canola | cytosol | 16.05 | 10.4 |
| CDX83662 | Canola | cytosol, plastid | 24.69 | 9.66 |
| CDX92699 | Canola | cytosol | 18.52 | 9.58 |
| CDY27513 | Canola | cytosol | 32.72 | 9.15 |
| CDY37901 | Canola | cytosol | 13.58 | 8.98 |
| CDY65918 | Canola | cytosol | 23.46 | 8.88 |
| CDY13667 | Canola | extracellular, plasma membrane | 14.81 | 8.66 |
| CDY41819 | Canola | cytosol | 3.09 | 7.04 |
| CDY30423 | Canola | extracellular, golgi | 9.26 | 6.88 |
| CDX92764 | Canola | cytosol, nucleus, plasma membrane | 9.26 | 5.93 |
| CDX71950 | Canola | cytosol | 3.09 | 3.76 |
Protein Annotations
| EnsemblPlants:CDY65463 | EnsemblPlantsGene:GSBRNA2T00046641001 | GO:A0A078JCV4 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR32212 | PANTHER:PTHR32212:SF233 | ProteinID:CDY65463 | ProteinID:CDY65463.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EE8A4C | UniProt:A0A078JCV4 | MapMan:35.1 | : | : | : |
Description
BnaAnng20530DBnaAnng20530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCV4]
Coordinates
chrLK034797:-:17958..19083
Molecular Weight (calculated)
18897.5 Da
IEP (calculated)
9.849
GRAVY (calculated)
0.230
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKGKAVMVT GRRWAVVSKE LNARHRKVSL DRNLRLFLFF LRAMLIYSVA YDLRHMENMP ALVEASVCIT TGVTQKFLKA LTSVHCLSLY LSFSEVVHPS
101: GMIFNQLVHL DLYTFTEGWW DLLTCMLQDS PKLRLLKLSN LHSLQILLIW ERSIRCSRCW HL
101: GMIFNQLVHL DLYTFTEGWW DLLTCMLQDS PKLRLLKLSN LHSLQILLIW ERSIRCSRCW HL
001: MDRISQLSDD LLLQILSFIP GKDVVATSLL SKRWQSLWML VSELEYDDSY HTGDYKSFSQ FVYRSLLSNN APVIKHLHLN LGPDCPAIDI GLWIGFALTR
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD
Arabidopsis Description
F-box/FBD/LRR-repeat protein At4g26340 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1R7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.