CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48198	Canola	cytosol	51.94	58.26
CDY00182	Canola	cytosol	28.68	45.68
CDX76220	Canola	endoplasmic reticulum, extracellular	35.66	30.46
CDX92766	Canola	cytosol	34.88	21.63
CDX88297	Canola	cytosol	36.43	20.0
AT3G55670.1	Thale cress	cytosol	32.56	19.27
CDY13667	Canola	extracellular, plasma membrane	40.31	18.77
CDY69654	Canola	cytosol	39.53	15.89
CDY00432	Canola	cytosol	30.23	15.6
CDX73615	Canola	cytosol	43.41	14.97
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	47.29	14.56
CDY48007	Canola	plastid	48.06	14.16
CDX89785	Canola	cytosol, extracellular, nucleus	37.21	13.79
CDY48199	Canola	extracellular, plasma membrane, vacuole	51.16	13.78
CDY48010	Canola	cytosol	47.29	13.59
CDX78112	Canola	cytosol	44.19	13.32
CDX87122	Canola	cytosol	37.98	12.96
CDY23229	Canola	cytosol	42.64	12.82
CDY72188	Canola	cytosol	41.86	12.59
CDY23230	Canola	cytosol	41.86	12.59
CDX83662	Canola	cytosol, plastid	39.53	12.32
CDX95363	Canola	cytosol	37.98	11.69
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	32.56	11.54
CDY00181	Canola	plasma membrane, plastid, vacuole	37.98	11.5
CDY63198	Canola	mitochondrion, plasma membrane	38.76	10.92
CDX94363	Canola	cytosol	30.23	10.71
CDY27513	Canola	cytosol	47.29	10.54
CDY65918	Canola	cytosol	34.88	10.51
CDY42742	Canola	cytosol	34.11	10.45
CDX94344	Canola	cytosol, peroxisome, plastid	33.33	10.26
CDX89345	Canola	cytosol, peroxisome, plastid	32.56	10.1
CDX83661	Canola	cytosol, mitochondrion, nucleus	30.23	9.75
CDX92699	Canola	cytosol	23.26	9.58
CDY65463	Canola	cytosol, extracellular, nucleus	11.63	9.26
CDY69799	Canola	cytosol	25.58	8.59
CDY52334	Canola	cytosol, nucleus, vacuole	28.68	8.39
CDX80649	Canola	cytosol	27.13	8.1
CDY06036	Canola	cytosol	25.58	7.64
CDX71951	Canola	plastid	25.58	6.23
CDY41819	Canola	cytosol	3.1	5.63
CDY30423	Canola	extracellular, golgi	9.3	5.5
CDY01270	Canola	extracellular, plasma membrane	11.63	5.19
CDX92764	Canola	cytosol, nucleus, plasma membrane	10.08	5.14
CDY65306	Canola	cytosol	6.98	2.78
CDX71950	Canola	cytosol	2.33	2.26
CDY37901	Canola	cytosol	0.78	0.41

Protein Annotations

EnsemblPlants:CDY37900	EnsemblPlantsGene:GSBRNA2T00064886001	InterPro:FBD	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	PFAM:PF08387
ProteinID:CDY37900	ProteinID:CDY37900.1	SMART:SM00579	UniParc:UPI0004EE9944	UniProt:A0A078HHN8	MapMan:35.1

Description

BnaA06g19170DBnaA06g19170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHN8]

Coordinates

chrLK032411:-:33883..34343

Molecular Weight (calculated)

15189.7 Da

IEP (calculated)

9.547

GRAVY (calculated)

-0.230

Length

129 amino acids

Sequence
(BLAST)

001: MLDSSPKLQI LKLIPVSHFI RQLICFHNGK WIQPKCVPEC LVLHLETFVW KRYKWRQEDE KELATYILQN SRCLKKAIFS TNNPEKLEKL GKRREMLNEL
101: TCVVRASSNP SDHHLSFYYA VLAIANLSF

Best Arabidopsis Sequence Match ( AT3G49045.1 )
(BLAST)

001: MLEASPKLQI LKLTDLNMSS TKGNQIGQKW IQPKCVPECL LFHLETFVWT GYEWQRRDEK EVARYILRNT TSLKKATFST KPIEPVKLKV FKKRREILNE
101: LASLGRASNP SDFVFESI

Arabidopsis Description

F-box/FBD/LRR protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.