CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, vacuole

Predictor Summary:

nucleus 1
plasma membrane 1
mitochondrion 1
plastid 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid, vacuole
Any Predictor:	nucleus, plasma membrane, vacuole
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63198	Canola	mitochondrion, plasma membrane	91.08	84.72
AT4G13965.1	Thale cress	endoplasmic reticulum, peroxisome	56.34	56.74
CDY00182	Canola	cytosol	10.09	53.09
AT1G55030.2	Thale cress	cytosol	51.88	51.16
CDX83661	Canola	cytosol, mitochondrion, nucleus	46.95	50.0
CDY69654	Canola	cytosol	36.85	48.91
CDX83662	Canola	cytosol, plastid	47.42	48.79
CDY13667	Canola	extracellular, plasma membrane	30.75	47.29
CDY69799	Canola	cytosol	41.55	46.09
CDX89785	Canola	cytosol, extracellular, nucleus	37.56	45.98
CDX78112	Canola	cytosol	46.01	45.79
CDX73615	Canola	cytosol	40.14	45.72
CDX88297	Canola	cytosol	25.12	45.53
CDY01270	Canola	extracellular, plasma membrane	30.75	45.33
CDX87122	Canola	cytosol	40.14	45.24
CDY00432	Canola	cytosol	26.53	45.2
CDY48010	Canola	cytosol	47.18	44.77
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	43.43	44.15
CDY48007	Canola	plastid	45.07	43.84
CDY48198	Canola	cytosol	11.5	42.61
CDY48199	Canola	extracellular, plasma membrane, vacuole	47.18	41.96
CDY23230	Canola	cytosol	41.78	41.49
CDY23229	Canola	cytosol	41.55	41.26
CDX76220	Canola	endoplasmic reticulum, extracellular	14.55	41.06
CDY72188	Canola	cytosol	41.31	41.03
CDY37901	Canola	cytosol	23.47	40.82
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	34.74	40.66
CDX94363	Canola	cytosol	34.27	40.11
CDX95363	Canola	cytosol	39.2	39.86
CDY65918	Canola	cytosol	39.67	39.49
CDX92699	Canola	cytosol	28.17	38.34
CDY37900	Canola	cytosol, extracellular, nucleus	11.5	37.98
CDY42742	Canola	cytosol	37.09	37.53
CDX94344	Canola	cytosol, peroxisome, plastid	36.62	37.23
CDX89345	Canola	cytosol, peroxisome, plastid	36.15	37.02
CDX92766	Canola	cytosol	18.08	37.02
CDY65306	Canola	cytosol	27.93	36.73
CDY27513	Canola	cytosol	48.36	35.58
CDY52334	Canola	cytosol, nucleus, vacuole	34.98	33.79
CDY06036	Canola	cytosol	33.57	33.1
CDY65463	Canola	cytosol, extracellular, nucleus	12.21	32.1
CDX80649	Canola	cytosol	31.92	31.48
CDX71950	Canola	cytosol	9.15	29.32
CDX71951	Canola	plastid	28.4	22.83
CDX92764	Canola	cytosol, nucleus, plasma membrane	12.21	20.55
CDY30423	Canola	extracellular, golgi	8.92	17.43
CDY41819	Canola	cytosol	1.41	8.45

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDY00181	ProteinID:CDY00181	ProteinID:CDY00181.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00109699001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646	PFAM:PF07723
PFAM:PF08387	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00579	SUPFAM:SSF52058	SUPFAM:SSF81383
UniParc:UPI0004EE7F7C	SEG:seg	:	:	:	:

Description

BnaC09g01200D

Coordinates

chrLK031916:-:1184635..1186100

Molecular Weight (calculated)

49132.7 Da

IEP (calculated)

10.010

GRAVY (calculated)

-0.029

Length

426 amino acids

Sequence
(BLAST)

001: MSNQDLENAD RISELPEALI LRILCLLPMK VAIATSLLSK QWRYLWKLMP KLKFDYLDHK CQLGTFSSNA CRTLLSHMAP VLQSLYLNVH LERCNAKDTG
101: VLLGIALGLH VHELVLEVRS RKVYKFPRSL FEVNTLGTLR LRYNVHMDVP SLVCFKSLRN LHLHYVDYMD NNSVTNLLGG CPNLKTLTVH RYSKSSVKTF
201: TISVPSLEKL SIYNSNGGQL DWGYVINAPS LKILKIKGIC GLGFCLIENV MQLVEASIID VSSISKENLL GSLTSVKRLS LRISPLKVTF PTGSIFDQLV
301: YLELHAYKEA WWNLLILMLD RSPKLKTLKF INKWHCEKDY VDRGEWKQPE NVPKCFWFLL ETFIWKGYKW QREDEKQVAK YVLKNAISLK RAFFSSKRIK
401: LKEKVEVVKD LKSVVRASNS CQLIFR

Best Arabidopsis Sequence Match ( AT4G13965.1 )
(BLAST)

001: KRGRGIVNAD RISQLPEALI IQILSLLPTE VAVTTSVLSK QWQFLWKMLP KLNFDSLDQR HEFKTFSKNV KRALLSHKAP VLHSLHLIVH LHLCNSMNTA
101: KLIGIAFACN LRKLVLEVDG GRFSIPESLY NCETLDTLEL KYSILMDVPS SICLKSLRTL HLHYVDFKDN ESALNLLSGC PNLENLVVHR YPFSSVKTYT
201: IAVSSLKRLT IYTSSTVDPR AGYVINSPSL TYLKIVGQIG FCLIENVPEL VEASMIVSSQ IINKNLLESL TSVKRLFLEF SPLMIKFPAG SIFYQLVYLE
301: LLTHEAECLN LLTLMLNSSP KLQILKLLSP KYQSWKKDVV GKWNKPKIVP ECLLFHLETF MWKGYEWKRN DETEVAKYIL SNTNRLKRAT FFSKPISSEE
401: RVKMVKNLNS VVRALNSCQL LIK

Arabidopsis Description

Protein with RNI-like/FBD-like domains [Source:TAIR;Acc:AT4G13965]
SUBAcon: [endoplasmic reticulum,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.