Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65306 | Canola | cytosol | 66.92 | 27.47 |
| CDY06036 | Canola | cytosol | 73.68 | 22.69 |
| CDX80649 | Canola | cytosol | 72.93 | 22.45 |
| CDY52334 | Canola | cytosol, nucleus, vacuole | 71.43 | 21.54 |
| CDX92699 | Canola | cytosol | 42.86 | 18.21 |
| CDX94344 | Canola | cytosol, peroxisome, plastid | 48.87 | 15.51 |
| CDX89345 | Canola | cytosol, peroxisome, plastid | 45.86 | 14.66 |
| CDY42742 | Canola | cytosol | 45.11 | 14.25 |
| CDY01270 | Canola | extracellular, plasma membrane | 29.32 | 13.49 |
| CDX73615 | Canola | cytosol | 36.09 | 12.83 |
| AT4G26350.1 | Thale cress | cytosol | 41.35 | 12.76 |
| CDX92764 | Canola | cytosol, nucleus, plasma membrane | 24.06 | 12.65 |
| CDY00432 | Canola | cytosol | 21.8 | 11.6 |
| CDX78112 | Canola | cytosol | 33.83 | 10.51 |
| CDY69799 | Canola | cytosol | 30.08 | 10.42 |
| CDY23229 | Canola | cytosol | 33.08 | 10.26 |
| CDX95363 | Canola | cytosol | 31.58 | 10.02 |
| CDY65918 | Canola | cytosol | 31.58 | 9.81 |
| CDY48010 | Canola | cytosol | 33.08 | 9.8 |
| CDY23230 | Canola | cytosol | 31.58 | 9.79 |
| CDX83662 | Canola | cytosol, plastid | 30.08 | 9.66 |
| CDY72188 | Canola | cytosol | 30.83 | 9.56 |
| CDY00181 | Canola | plasma membrane, plastid, vacuole | 29.32 | 9.15 |
| CDY69654 | Canola | cytosol | 21.8 | 9.03 |
| CDX83661 | Canola | cytosol, mitochondrion, nucleus | 27.07 | 9.0 |
| CDY37901 | Canola | cytosol | 16.54 | 8.98 |
| CDY48199 | Canola | extracellular, plasma membrane, vacuole | 32.33 | 8.98 |
| CDY48007 | Canola | plastid | 28.57 | 8.68 |
| CDY63198 | Canola | mitochondrion, plasma membrane | 27.82 | 8.08 |
| CDY27513 | Canola | cytosol | 33.83 | 7.77 |
| CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 23.31 | 7.4 |
| CDX76220 | Canola | endoplasmic reticulum, extracellular | 7.52 | 6.62 |
| CDX88297 | Canola | cytosol | 11.28 | 6.38 |
| CDX89356 | Canola | cytosol, extracellular, mitochondrion, plastid | 15.79 | 5.77 |
| CDX94363 | Canola | cytosol | 15.79 | 5.77 |
| CDX87122 | Canola | cytosol | 15.79 | 5.56 |
| CDY65463 | Canola | cytosol, extracellular, nucleus | 3.76 | 3.09 |
| CDX92766 | Canola | cytosol | 4.51 | 2.88 |
| CDY48198 | Canola | cytosol | 2.26 | 2.61 |
| CDY13667 | Canola | extracellular, plasma membrane | 5.26 | 2.53 |
| CDY00182 | Canola | cytosol | 1.5 | 2.47 |
| CDY37900 | Canola | cytosol, extracellular, nucleus | 2.26 | 2.33 |
| CDX89785 | Canola | cytosol, extracellular, nucleus | 6.02 | 2.3 |
| CDX71951 | Canola | plastid | 9.02 | 2.26 |
| CDY30423 | Canola | extracellular, golgi | 2.26 | 1.38 |
| CDY41819 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX71950 | EnsemblPlantsGene:GSBRNA2T00155708001 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF233 | ProteinID:CDX71950 |
| ProteinID:CDX71950.1 | SEG:seg | SUPFAM:SSF81383 | UniParc:UPI0004EF2712 | MapMan:35.1 | : |
Description
BnaC08g29240D
Coordinates
chrLK031795:+:1450301..1450772
Molecular Weight (calculated)
15049.4 Da
IEP (calculated)
8.623
GRAVY (calculated)
0.248
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMISQLSDD LLIRILSRLW TKHVMATCCL SKRWLLLRSL VSKLYYDDSS YSDENYATFT QFVYRSLMSN KAPVIEILYL NLGPKCQAID VGNWIETAVV
101: CHRVQAIIAT IRAATPTMSL SHRSSGTVDT LSI
101: CHRVQAIIAT IRAATPTMSL SHRSSGTVDT LSI
001: MDRISQLSDD LLLQILSFIP GKDVVATSLL SKRWQSLWML VSELEYDDSY HTGDYKSFSQ FVYRSLLSNN APVIKHLHLN LGPDCPAIDI GLWIGFALTR
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD
Arabidopsis Description
F-box/FBD/LRR-repeat protein At4g26340 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1R7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.