CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026446.1-P	Field mustard	cytosol	96.63	96.4
CDX94344	Canola	cytosol, peroxisome, plastid	92.07	91.41
AT4G26340.1	Thale cress	cytosol	65.62	65.16
CDY42742	Canola	cytosol	57.45	56.77
CDX92699	Canola	cytosol	42.31	56.23
CDX92766	Canola	cytosol	27.4	54.81
CDY65463	Canola	cytosol, extracellular, nucleus	20.19	51.85
CDY65306	Canola	cytosol	38.22	49.07
CDX71950	Canola	cytosol	14.66	45.86
CDY52334	Canola	cytosol, nucleus, vacuole	48.08	45.35
CDY06036	Canola	cytosol	45.43	43.75
CDX80649	Canola	cytosol	44.23	42.59
CDX73615	Canola	cytosol	35.82	39.84
CDX83661	Canola	cytosol, mitochondrion, nucleus	37.02	38.5
CDX83662	Canola	cytosol, plastid	37.74	37.92
CDX78112	Canola	cytosol	38.94	37.85
CDY01270	Canola	extracellular, plasma membrane	25.96	37.37
CDX94363	Canola	cytosol	32.69	37.36
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	32.21	36.81
CDY00181	Canola	plasma membrane, plastid, vacuole	37.02	36.15
CDY13667	Canola	extracellular, plasma membrane	24.04	36.1
CDY69799	Canola	cytosol	33.17	35.94
CDY23229	Canola	cytosol	37.02	35.9
CDY23230	Canola	cytosol	36.78	35.66
CDY48198	Canola	cytosol	9.86	35.65
CDX95363	Canola	cytosol	35.82	35.56
CDX87122	Canola	cytosol	32.21	35.45
CDY72188	Canola	cytosol	36.54	35.43
CDY69654	Canola	cytosol	27.16	35.2
CDY48010	Canola	cytosol	37.98	35.19
CDX89785	Canola	cytosol, extracellular, nucleus	29.09	34.77
CDY00182	Canola	cytosol	6.73	34.57
CDY48007	Canola	plastid	36.3	34.47
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	34.38	34.13
CDX88297	Canola	cytosol	18.99	33.62
CDX92764	Canola	cytosol, nucleus, plasma membrane	20.43	33.6
CDY37901	Canola	cytosol	19.47	33.06
CDY48199	Canola	extracellular, plasma membrane, vacuole	37.98	32.99
CDY37900	Canola	cytosol, extracellular, nucleus	10.1	32.56
CDX76220	Canola	endoplasmic reticulum, extracellular	11.78	32.45
CDY63198	Canola	mitochondrion, plasma membrane	35.1	31.88
CDY65918	Canola	cytosol	31.97	31.07
CDY00432	Canola	cytosol	18.51	30.8
CDX71951	Canola	plastid	34.13	26.79
CDY27513	Canola	cytosol	36.78	26.42
CDY30423	Canola	extracellular, golgi	9.38	17.89
CDY41819	Canola	cytosol	1.68	9.86

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX89345	ProteinID:CDX89345	ProteinID:CDX89345.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00149570001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646	PFAM:PF07723
PFAM:PF08387	PANTHER:PTHR32212	SMART:SM00256	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0004EEBD4B	SEG:seg	:	:	:	:

Description

BnaA01g15480D

Coordinates

chrLK031858:-:1006669..1008505

Molecular Weight (calculated)

46698.4 Da

IEP (calculated)

4.852

GRAVY (calculated)

0.093

Length

416 amino acids

Sequence
(BLAST)

001: MDIISALSDD LLLRILSFVP TKDVVATSLL SKRWEGLWTS VSKLAYDDSD HTGDYKNFSQ FVYRSLLSNN APVLDKLHLK LGPDCPFIDV DLWTNIALTR
101: RVRELEIDLF SKEESFNLPN SLYTSETLEI LTLISCVLVN VPSSVCLPSL KTLKLDRVDY TDNATLPLLL SGCPNLEVLF LERHVGDETT DSIVVAPSLQ
201: RLTMLDTHAG TCSRFVVDVP SLKHLEITDS VAYYDLRRME NMPVLEKACV WITSSGVTQE FLKALTSVHR LSLSLSLSEV MHPSGMTFNQ LVHLDLYTLT
301: EGWWGLLTCM LLDSPKLRFL RLSNNKLTSE SKEIPIGWSP PSSVPECLVY SLEAFVWIGY NGRQDKEMAI YLLKNTACLK TATFSPDSTD LAEKYQMLKV
401: LASVATMSTS SQLLFD

Best Arabidopsis Sequence Match ( AT4G26340.1 )
(BLAST)

001: MDRISQLSDD LLLQILSFIP GKDVVATSLL SKRWQSLWML VSELEYDDSY HTGDYKSFSQ FVYRSLLSNN APVIKHLHLN LGPDCPAIDI GLWIGFALTR
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD

Arabidopsis Description

F-box/FBD/LRR-repeat protein At4g26340 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1R7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.