CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69654	Canola	cytosol	55.21	66.04
CDY48199	Canola	extracellular, plasma membrane, vacuole	74.74	59.92
CDY37901	Canola	cytosol	33.33	52.24
CDY00432	Canola	cytosol	32.29	49.6
AT2G04230.1	Thale cress	cytosol	57.29	49.11
AT3G49030.1	Thale cress	cytosol	55.73	48.31
CDY01270	Canola	extracellular, plasma membrane	35.42	47.06
CDX83661	Canola	cytosol, mitochondrion, nucleus	46.88	45.0
CDY48007	Canola	plastid	50.26	44.06
CDY48010	Canola	cytosol	50.78	43.43
CDX83662	Canola	cytosol, plastid	45.31	42.03
CDY00181	Canola	plasma membrane, plastid, vacuole	46.09	41.55
CDX78112	Canola	cytosol	45.05	40.42
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	44.01	40.33
CDY63198	Canola	mitochondrion, plasma membrane	47.14	39.52
CDX73615	Canola	cytosol	38.28	39.3
CDX87122	Canola	cytosol	38.28	38.89
CDY13667	Canola	extracellular, plasma membrane	27.6	38.27
CDX95363	Canola	cytosol	41.67	38.19
CDY23230	Canola	cytosol	41.93	37.53
CDY23229	Canola	cytosol	41.93	37.53
CDY48198	Canola	cytosol	11.2	37.39
CDY72188	Canola	cytosol	41.41	37.06
CDY65306	Canola	cytosol	30.99	36.73
CDY27513	Canola	cytosol	54.17	35.92
CDX89785	Canola	cytosol, extracellular, nucleus	32.55	35.92
CDX94363	Canola	cytosol	33.07	34.89
CDX94344	Canola	cytosol, peroxisome, plastid	37.5	34.37
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	32.29	34.07
CDY65918	Canola	cytosol	37.5	33.64
CDY65463	Canola	cytosol, extracellular, nucleus	14.06	33.33
CDX89345	Canola	cytosol, peroxisome, plastid	35.94	33.17
CDX88297	Canola	cytosol	20.05	32.77
CDX92699	Canola	cytosol	25.78	31.63
CDY42742	Canola	cytosol	33.85	30.88
CDX71950	Canola	cytosol	10.42	30.08
CDY52334	Canola	cytosol, nucleus, vacuole	33.33	29.02
CDY06036	Canola	cytosol	32.29	28.7
CDY00182	Canola	cytosol	5.99	28.4
CDX80649	Canola	cytosol	31.25	27.78
CDX92766	Canola	cytosol	14.84	27.4
CDX76220	Canola	endoplasmic reticulum, extracellular	10.42	26.49
CDY37900	Canola	cytosol, extracellular, nucleus	8.59	25.58
CDX92764	Canola	cytosol, nucleus, plasma membrane	14.58	22.13
CDX71951	Canola	plastid	26.82	19.43
CDY30423	Canola	extracellular, golgi	10.42	18.35
CDY41819	Canola	cytosol	2.08	11.27

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078JSM5	EnsemblPlants:CDY69799	ProteinID:CDY69799	ProteinID:CDY69799.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00092505001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646
PFAM:PF07723	PFAM:PF08387	PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00256
SUPFAM:SSF52058	SUPFAM:SSF81383	UniParc:UPI0004EDC7E0	:	:	:

Description

BnaCnng65420DBnaCnng65420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JSM5]

Coordinates

chrLK040370:-:2043..3574

Molecular Weight (calculated)

44483.8 Da

IEP (calculated)

5.050

GRAVY (calculated)

0.003

Length

384 amino acids

Sequence
(BLAST)

001: MIFYFIYCYS KIGGESLINR DAMNKDMISE LPEALLLHIL SYVPTEDVIA TSVLSKRWRS LWKMVPKLEF ESNIEQVSSE DVYRLLLLHK APFLESLHLN
101: IENTKGRLDS GILIGIAFSR HVRKLELDLY HDDQETVRFP SVLCSYNNTL EVLNLMHHVL LDFPSRVCFN ALRELHLFHV EFKDEASVCN LLYGCPRLQD
201: LVVTRYSSID VETYTIAVPS LQRLTIEEDS SQDMYGGGYV INAPSLKYLN IKGLYCIDFF LFENAPELVE AKINDVSEID NENILASLTS AKRLSFQFTV
301: EVKYPTGGIF YQLVFLKLRI DDINGWNLLS FMLDSSPKLQ SLKLYGSCWE DCPVGWEWTQ PKCVPECLLL HLETLVWRRY GWQR

Best Arabidopsis Sequence Match ( AT3G49020.1 )
(BLAST)

001: MEQKCKIGGE GLRNRGLVNE EDRISELPEA LLLLILSSLP TETVIATSVL SKQWKSLWKL VPNLKFDSKY HYHYTFSDNV FRSLISHKAP VLDSLHLKVE
101: DKDDALDVGI LIGIAFSRHM RKFVLKITLL EESFVRFPSA WCSCNDTLEI LELKYCILLD FPSLVCLKSL RKLYLYHVRF NDEESVCNLL CGCPSLEDLV
201: VHRHSTTDVE SYTIAVPSLQ RLTIYDDYYG EGVGGYVINA PSLKYLNIDG FNGLEFCLIE KAPELVEAKI SAVFEIANEN IMDSLTSAKC LSLHLAPFKI
301: KYPTGKIFYQ LLSLELRAYS YEWWNLLWFM LDSSPKLQIL KLVDPYQFPK EDCSVGWEWS RPKCVPECLL FHLETFVWTR YEWQREDEKA VATYILKNAR
401: CLKKATLSTK PIGSEELEKL GKRREMLNEL ATQASPSNSC NLVFESE

Arabidopsis Description

FBD-associated F-box protein At3g49020 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMT9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.