CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72188	Canola	cytosol	98.14	98.14
CDY23230	Canola	cytosol	97.44	97.44
CDX95363	Canola	cytosol	91.84	94.03
CDX76220	Canola	endoplasmic reticulum, extracellular	30.07	85.43
CDX78112	Canola	cytosol	61.77	61.92
CDX73615	Canola	cytosol	53.61	61.5
CDY48198	Canola	cytosol	13.99	52.17
AT3G52680.1	Thale cress	cytosol	55.24	51.97
AT4G00160.1	Thale cress	cytosol	54.55	51.66
CDY00182	Canola	cytosol	9.09	48.15
CDY69654	Canola	cytosol	34.27	45.79
CDX87122	Canola	cytosol	38.93	44.18
CDY48007	Canola	plastid	43.82	42.92
CDY37900	Canola	cytosol, extracellular, nucleus	12.82	42.64
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	41.26	42.24
CDY13667	Canola	extracellular, plasma membrane	27.27	42.24
CDY48010	Canola	cytosol	44.06	42.09
CDX89785	Canola	cytosol, extracellular, nucleus	34.03	41.95
CDY69799	Canola	cytosol	37.53	41.93
CDY00181	Canola	plasma membrane, plastid, vacuole	41.26	41.55
CDY48199	Canola	extracellular, plasma membrane, vacuole	46.15	41.34
CDX83662	Canola	cytosol, plastid	39.16	40.58
CDX83661	Canola	cytosol, mitochondrion, nucleus	37.76	40.5
CDY01270	Canola	extracellular, plasma membrane	27.27	40.48
CDX88297	Canola	cytosol	21.68	39.57
CDY37901	Canola	cytosol	22.38	39.18
CDY63198	Canola	mitochondrion, plasma membrane	41.26	38.65
CDX94344	Canola	cytosol, peroxisome, plastid	36.83	37.71
CDY00432	Canola	cytosol	21.91	37.6
CDY65918	Canola	cytosol	37.06	37.15
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	31.47	37.09
CDX89345	Canola	cytosol, peroxisome, plastid	35.9	37.02
CDX92699	Canola	cytosol	26.81	36.74
CDY65306	Canola	cytosol	27.51	36.42
CDX94363	Canola	cytosol	30.77	36.26
CDY42742	Canola	cytosol	34.97	35.63
CDX92766	Canola	cytosol	16.32	33.65
CDY27513	Canola	cytosol	44.99	33.33
CDY52334	Canola	cytosol, nucleus, vacuole	34.03	33.11
CDX71950	Canola	cytosol	10.26	33.08
CDY06036	Canola	cytosol	31.93	31.71
CDX80649	Canola	cytosol	30.77	30.56
CDY65463	Canola	cytosol, extracellular, nucleus	11.19	29.63
CDX71951	Canola	plastid	27.51	22.26
CDX92764	Canola	cytosol, nucleus, plasma membrane	13.05	22.13
CDY30423	Canola	extracellular, golgi	9.32	18.35
CDY41819	Canola	cytosol	1.86	11.27

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078GD00	EnsemblPlants:CDY23229	ProteinID:CDY23229	ProteinID:CDY23229.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00021780001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646
PFAM:PF07723	PFAM:PF08387	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00579	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0004EDD213	SEG:seg	:	:	:

Description

BnaA04g05300DBnaA04g05300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GD00]

Coordinates

chrLK032141:+:552444..553908

Molecular Weight (calculated)

49338.6 Da

IEP (calculated)

6.583

GRAVY (calculated)

-0.096

Length

429 amino acids

Sequence
(BLAST)

001: MAEEMNIGQL DENLILKILS LVPIKTVVST SVLSKEWQSR WKSVPKLKFN SEDYQSEHQT FSETVYKSLL SYEAEVLDSF HLSFGSDKPD AVDVVNWIKT
101: AFALHLRTLV LEFLIYPYEV DEFIFTSSLC TCDTLVTLKL GSLILVDIPA PGSMKSLKTL HLIHAFYTND ESICNLLSGC PRLEELVVER SCEHSVKFFT
201: IKVPSLQRLR IYDDNDEDEF VGYVIDTPYL KYLEIGYLGC PQFSLNAPGL VAAYIGRVSN VISESLVSVR RLVLNVSTSM TIYPPTGCIF YQLVYLQIYT
301: HEPGWYDLLT WMLEHSPKLQ VLKLVGKYRI NPDYHVLGWE WNKPKSVPEC LLSHLETFVW RRYDWKGEKE EEVATYLLKN ARGLKNATFS TGPIEPGQLD
401: KLKQRRRTRK KLDGVLKASN TCHLVFKFE

Best Arabidopsis Sequence Match ( AT3G52680.1 )
(BLAST)

001: MISPTMEQGE SLRIRVVMGK DRISELPDGL LLKILSSLPT NIVVATSVLS KQWRSLWKLV PNLEFDSDDY ESEHYTFSEI VCKSFLSHKA PVLESFRLKF
101: VNFNPVDIGL WVGIAFSRHL RELVLDFYPA ELGKGVTFTF PSSLCTCNTL ETLKLVLCIL VDIPSPVLMK SLRTLHLEFV RYKDESSVRN LLSGCPGLEE
201: LRLYRGDDSD IKVFTIEVPS LQRLTIHDNN DGPEFWGYVI NAPFLKYLLI EELRCPEFCL NAPELVEANI AEVTSITIEK FLGSFTSVSR LLLNLSPLKI
301: TYPTGSMFYQ LVSLEMYTRE AEWWNLLTLM LENSPKLQVL KLTDRSQNFH KDGLVSGKWN EPKDVPECLL SQLETFVWRR FDWGREEEKE IATYILKNGR
401: RLKKATFSTN PIESEELNKL KERRKVLNGL DGVVRASNSC QLVFKFDPSY LGSDSP

Arabidopsis Description

F-box/FBD/LRR-repeat protein At3g52680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXJ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.