Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G52680.1 | Thale cress | cytosol | 79.91 | 79.39 |
| CDX73615 | Canola | cytosol | 50.33 | 60.96 |
| CDX78112 | Canola | cytosol | 57.17 | 60.51 |
| AT3G52690.1 | Thale cress | extracellular, plasma membrane | 36.87 | 55.85 |
| CDY23229 | Canola | cytosol | 51.66 | 54.55 |
| CDY72188 | Canola | cytosol | 51.43 | 54.31 |
| AT3G49045.1 | Thale cress | cytosol | 14.13 | 54.24 |
| CDY23230 | Canola | cytosol | 51.21 | 54.08 |
| Bra006939.1-P | Field mustard | cytosol | 39.29 | 53.94 |
| CDX76220 | Canola | endoplasmic reticulum, extracellular | 17.88 | 53.64 |
| CDX95363 | Canola | cytosol | 48.57 | 52.51 |
| AT3G49020.1 | Thale cress | cytosol, nucleus, plasma membrane | 51.43 | 52.13 |
| AT3G51530.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 51.43 | 51.21 |
| AT4G13965.1 | Thale cress | endoplasmic reticulum, peroxisome | 47.24 | 50.59 |
| AT3G49030.1 | Thale cress | cytosol | 49.45 | 50.56 |
| AT3G26922.2 | Thale cress | cytosol | 33.77 | 50.0 |
| AT3G49040.1 | Thale cress | cytosol | 32.89 | 47.91 |
| AT2G04230.1 | Thale cress | cytosol | 46.36 | 46.88 |
| AT3G26920.3 | Thale cress | cytosol | 34.66 | 46.18 |
| AT3G26930.2 | Thale cress | extracellular, peroxisome, plastid | 44.81 | 44.71 |
| AT1G55030.2 | Thale cress | cytosol | 42.38 | 44.44 |
| AT4G26340.1 | Thale cress | cytosol | 40.18 | 43.44 |
| AT4G26350.1 | Thale cress | cytosol | 33.11 | 34.8 |
| AT3G55670.1 | Thale cress | cytosol | 16.11 | 33.49 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:828180 | ProteinID:AAC19303.1 | ProteinID:AEE81830.1 | ArrayExpress:AT4G00160 |
| EnsemblPlantsGene:AT4G00160 | RefSeq:AT4G00160 | TAIR:AT4G00160 | RefSeq:AT4G00160-TAIR-G | EnsemblPlants:AT4G00160.1 | TAIR:AT4G00160.1 |
| EMBL:AY085107 | Unigene:At.34592 | ProteinID:CAB80774.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0008150 | InterPro:IPR001810 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_567152.1 | PFAM:PF00646 | PFAM:PF07723 |
| PFAM:PF08387 | PO:PO:0000084 | PO:PO:0007616 | PO:PO:0009046 | PFscan:PS50181 | PANTHER:PTHR32212 |
| PANTHER:PTHR32212:SF234 | UniProt:Q8LF09 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0000162953 |
| SEG:seg | : | : | : | : | : |
Description
F-box/FBD/LRR-repeat protein At4g00160 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF09]
Coordinates
chr4:+:63410..65479
Molecular Weight (calculated)
52065.7 Da
IEP (calculated)
5.083
GRAVY (calculated)
-0.129
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQGESLRIR VVMGKDRISE LPDALLIKIL SFLPTKIVVA TSVFSKQWRP LWKLVPNLEF DSEDYDDKEQ YTFSEIVCKS FLSHKAPVLE SFRLEFESEK
101: VDPVDIGLWV GIAFSRHLRE LVLVAADTGT GTAFKFPSSL CTCNTLETLR LVLLILVDIS SPVVMKSLRT LHLELVSYKD ESSIRNLLSG CPILEELLVI
201: RGEDSDIEVF TIDEVPSLKR LTINDDHDGQ EFWGYVINAP SLKYLLIEDL RCPGFCLNAP ELMEANIFDG TSITNDNFLG YLTSVKRLLL NLSPWKITYP
301: TGSIFYQLVS LEMYTREIDW WDLLTLMLEH SPKLQVLKLT DNCVKFHKNG LPGGKWNEPK YVPECLLSHL ETFVWRRFDW GREEEKEIAT YILKNARRLN
401: KATFSTNPVN SEELDKLKER RKVHNELDGV VRASNSCQFV FKFDTSYHVS DSS
101: VDPVDIGLWV GIAFSRHLRE LVLVAADTGT GTAFKFPSSL CTCNTLETLR LVLLILVDIS SPVVMKSLRT LHLELVSYKD ESSIRNLLSG CPILEELLVI
201: RGEDSDIEVF TIDEVPSLKR LTINDDHDGQ EFWGYVINAP SLKYLLIEDL RCPGFCLNAP ELMEANIFDG TSITNDNFLG YLTSVKRLLL NLSPWKITYP
301: TGSIFYQLVS LEMYTREIDW WDLLTLMLEH SPKLQVLKLT DNCVKFHKNG LPGGKWNEPK YVPECLLSHL ETFVWRRFDW GREEEKEIAT YILKNARRLN
401: KATFSTNPVN SEELDKLKER RKVHNELDGV VRASNSCQFV FKFDTSYHVS DSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.