Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, peroxisome
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 1
- nucleus 1
- mitochondrion 1
- peroxisome 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00181 | Canola | plasma membrane, plastid, vacuole | 56.74 | 56.34 |
| Bra034248.1-P | Field mustard | golgi, mitochondrion, plasma membrane | 56.03 | 54.11 |
| AT3G26922.2 | Thale cress | cytosol | 39.01 | 53.92 |
| AT1G55030.2 | Thale cress | cytosol | 54.37 | 53.24 |
| CDY63198 | Canola | mitochondrion, plasma membrane | 56.03 | 51.75 |
| AT3G52690.1 | Thale cress | extracellular, plasma membrane | 36.41 | 51.51 |
| AT3G26920.3 | Thale cress | cytosol | 41.13 | 51.18 |
| AT3G49030.1 | Thale cress | cytosol | 52.48 | 50.11 |
| AT3G26930.2 | Thale cress | extracellular, peroxisome, plastid | 53.19 | 49.56 |
| AT2G04230.1 | Thale cress | cytosol | 52.25 | 49.33 |
| AT3G49045.1 | Thale cress | cytosol | 13.71 | 49.15 |
| AT3G49020.1 | Thale cress | cytosol, nucleus, plasma membrane | 51.3 | 48.55 |
| AT3G52680.1 | Thale cress | cytosol | 51.77 | 48.03 |
| AT4G00160.1 | Thale cress | cytosol | 50.59 | 47.24 |
| AT3G49040.1 | Thale cress | cytosol | 33.57 | 45.66 |
| AT3G51530.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 47.28 | 43.96 |
| AT4G26340.1 | Thale cress | cytosol | 40.66 | 41.05 |
| AT4G26350.1 | Thale cress | cytosol | 34.99 | 34.34 |
| AT3G55670.1 | Thale cress | cytosol | 14.66 | 28.44 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | ArrayExpress:AT4G13965 | EnsemblPlantsGene:AT4G13965 | RefSeq:AT4G13965 | TAIR:AT4G13965 |
| RefSeq:AT4G13965-TAIR-G | EnsemblPlants:AT4G13965.1 | TAIR:AT4G13965.1 | Unigene:At.65375 | InterPro:F-box-like_dom_sf | InterPro:FBD |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 |
| PFAM:PF07723 | PFAM:PF08387 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF234 | SMART:SM00579 | SUPFAM:SSF52058 |
| SUPFAM:SSF81383 | UniParc:UPI0008484C45 | SEG:seg | : | : | : |
Description
Protein with RNI-like/FBD-like domains [Source:TAIR;Acc:AT4G13965]
Coordinates
chr4:-:8066138..8067576
Molecular Weight (calculated)
48259.6 Da
IEP (calculated)
9.796
GRAVY (calculated)
0.077
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: KRGRGIVNAD RISQLPEALI IQILSLLPTE VAVTTSVLSK QWQFLWKMLP KLNFDSLDQR HEFKTFSKNV KRALLSHKAP VLHSLHLIVH LHLCNSMNTA
101: KLIGIAFACN LRKLVLEVDG GRFSIPESLY NCETLDTLEL KYSILMDVPS SICLKSLRTL HLHYVDFKDN ESALNLLSGC PNLENLVVHR YPFSSVKTYT
201: IAVSSLKRLT IYTSSTVDPR AGYVINSPSL TYLKIVGQIG FCLIENVPEL VEASMIVSSQ IINKNLLESL TSVKRLFLEF SPLMIKFPAG SIFYQLVYLE
301: LLTHEAECLN LLTLMLNSSP KLQILKLLSP KYQSWKKDVV GKWNKPKIVP ECLLFHLETF MWKGYEWKRN DETEVAKYIL SNTNRLKRAT FFSKPISSEE
401: RVKMVKNLNS VVRALNSCQL LIK
101: KLIGIAFACN LRKLVLEVDG GRFSIPESLY NCETLDTLEL KYSILMDVPS SICLKSLRTL HLHYVDFKDN ESALNLLSGC PNLENLVVHR YPFSSVKTYT
201: IAVSSLKRLT IYTSSTVDPR AGYVINSPSL TYLKIVGQIG FCLIENVPEL VEASMIVSSQ IINKNLLESL TSVKRLFLEF SPLMIKFPAG SIFYQLVYLE
301: LLTHEAECLN LLTLMLNSSP KLQILKLLSP KYQSWKKDVV GKWNKPKIVP ECLLFHLETF MWKGYEWKRN DETEVAKYIL SNTNRLKRAT FFSKPISSEE
401: RVKMVKNLNS VVRALNSCQL LIK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.