Factsheet for Bra034248.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, golgi

Predictor Summary:

nucleus 2
plasma membrane 2
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63198	Canola	mitochondrion, plasma membrane	98.86	94.54
AT4G13965.1	Thale cress	endoplasmic reticulum, peroxisome	54.11	56.03
AT1G55030.2	Thale cress	cytosol	51.14	51.85
Bra025236.1-P	Field mustard	cytosol	42.01	50.0
Bra015355.1-P	Field mustard	cytosol, extracellular, nucleus	37.21	46.84
Bra023272.1-P	Field mustard	cytosol	36.3	42.74
Bra034324.1-P	Field mustard	cytosol	11.19	42.61
Bra019575.1-P	Field mustard	cytosol	22.37	41.53
Bra006939.1-P	Field mustard	cytosol	30.82	40.91
Bra026459.1-P	Field mustard	cytosol, nucleus, plastid	40.64	40.73
Bra040480.1-P	Field mustard	cytosol	46.12	36.93
Bra019111.1-P	Field mustard	cytosol	29.91	34.84
Bra026446.1-P	Field mustard	cytosol	32.88	34.53
Bra007575.1-P	Field mustard	extracellular, vacuole	33.1	32.88
Bra007397.1-P	Field mustard	cytosol	31.51	31.94

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra034248	EnsemblPlants:Bra034248.1	EnsemblPlants:Bra034248.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	UniProt:M4EZK5
PFAM:PF00646	PFAM:PF08387	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00579	SUPFAM:SSF52058
SUPFAM:SSF81383	TMHMM:TMhelix	UniParc:UPI0002543815	SEG:seg	:	:

Description

AT4G13965 (E=8e-097) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G55030.1); Has 1305 Blast hits to 1279 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 4; Plants - 1281; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

Coordinates

chrA01:-:26724547..26726147

Molecular Weight (calculated)

50681.6 Da

IEP (calculated)

10.204

GRAVY (calculated)

-0.069

Length

438 amino acids

Sequence
(BLAST)

001: MERHSKRRVT GSMSNQDLEN ADRISELPEA LILLILCLLP MKVAIATSLL SKQWRYLWKL MPKLKFDYLD HKRQLGTFSS NVCSTLVSHM SPVLQSLYLI
101: VHQERCNAKD IGILLGIALG LHVHELVLEV RSREVYKFPR SLFIVNTLRT LKLRYNVHMD VPSLVRFKSL RNLHLHYVEY RDHNSVINLF GGCPNLKTLT
201: VHRYSHSSVK TFTISVPSLE RLSIYNSNGG QVDWGYAINA PSLKLLKIKG ICGLGFCLIE NVMELVEASI IDVSSISNEN LLGSLTSVKR LSLRISPLKV
301: TFPTGSIFDQ LVYLELHAYK EAWWNLLTLM LDRSPKLKTL KLINKWHCEK EYVGRGEWKQ PENVPKCFWF LLETFIWKGY KWQREDEKQV AKYVLKNAIN
401: LKRAIISSKR IKPKERVEVV KDLKSVVRAS NFCQLIFK

Best Arabidopsis Sequence Match ( AT4G13965.1 )
(BLAST)

001: KRGRGIVNAD RISQLPEALI IQILSLLPTE VAVTTSVLSK QWQFLWKMLP KLNFDSLDQR HEFKTFSKNV KRALLSHKAP VLHSLHLIVH LHLCNSMNTA
101: KLIGIAFACN LRKLVLEVDG GRFSIPESLY NCETLDTLEL KYSILMDVPS SICLKSLRTL HLHYVDFKDN ESALNLLSGC PNLENLVVHR YPFSSVKTYT
201: IAVSSLKRLT IYTSSTVDPR AGYVINSPSL TYLKIVGQIG FCLIENVPEL VEASMIVSSQ IINKNLLESL TSVKRLFLEF SPLMIKFPAG SIFYQLVYLE
301: LLTHEAECLN LLTLMLNSSP KLQILKLLSP KYQSWKKDVV GKWNKPKIVP ECLLFHLETF MWKGYEWKRN DETEVAKYIL SNTNRLKRAT FFSKPISSEE
401: RVKMVKNLNS VVRALNSCQL LIK

Arabidopsis Description

Protein with RNI-like/FBD-like domains [Source:TAIR;Acc:AT4G13965]
SUBAcon: [endoplasmic reticulum,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.