Factsheet for Bra015355.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
extracellular 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89785	Canola	cytosol, extracellular, nucleus	97.99	97.99
Bra023272.1-P	Field mustard	cytosol	45.69	42.74
Bra034324.1-P	Field mustard	cytosol	12.93	39.13
AT3G26922.2	Thale cress	cytosol	33.05	37.58
Bra034248.1-P	Field mustard	golgi, mitochondrion, plasma membrane	46.84	37.21
Bra019575.1-P	Field mustard	cytosol	23.28	34.32
Bra025236.1-P	Field mustard	cytosol	35.63	33.7
Bra026459.1-P	Field mustard	cytosol, nucleus, plastid	40.8	32.49
Bra006939.1-P	Field mustard	cytosol	27.59	29.09
Bra040480.1-P	Field mustard	cytosol	45.69	29.07
Bra026446.1-P	Field mustard	cytosol	34.77	29.02
Bra019111.1-P	Field mustard	cytosol	28.45	26.33
Bra007397.1-P	Field mustard	cytosol	30.17	24.31
Bra007575.1-P	Field mustard	extracellular, vacuole	30.17	23.81

Protein Annotations

EnsemblPlants:Bra015355.1	EnsemblPlants:Bra015355.1-P	EnsemblPlantsGene:Bra015355	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	ncoils:Coil	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	PFAM:PF07723
PFAM:PF08387	SEG:seg	SMART:SM00579	SUPFAM:SSF52047	UniParc:UPI0002543CBA	UniProt:M4DFT2
MapMan:35.1	:	:	:	:	:

Description

AT3G26930 (E=5e-069) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13965.1); Has 678 Blast hits to 661 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 21; Fungi - 0; Plants - 651; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

Coordinates

chrA10:+:2308848..2309894

Molecular Weight (calculated)

40261.1 Da

IEP (calculated)

7.376

GRAVY (calculated)

-0.079

Length

348 amino acids

Sequence
(BLAST)

001: MDIGMWIGIA YARHVRELIL DVETETRYSN FKFPKCFYNC QTLETLIIKT WILIDIPSSQ VCLKSLKKLH LCYVDYKDDE SVVNLLSGCP NLQELVIHRN
101: LQVVRVFTIA VPSLQRLEIY DWSYGHEMVG SYVVNTPSLK YLKIKGFPRL RFSMVEIAPE LVEANVIDLS EVIDKKLMQS LASVKRLSLS LSPSEMITFP
201: NTDLYLSPSE LIAFPSTGTI FHQLVHLELS TDKAYWWNLL TRMINTSPRL QVLKLIGEWY YGKVGVSCKE WNQPKNVPEC LETFVWNTYK EQQEEEKEVA
301: KYILRNANRL KKASISIKGF NSDERLQLLK ELENVVKASN SPCELLMC

Best Arabidopsis Sequence Match ( AT1G55030.1 )
(BLAST)

001: MNNRGAVTDM ISQLPEPLIL QILGSLPTKV AITTSVLSKQ WQSHWKMMPK LEFDSFLRRL DLENVTKCLL SHKAPVLQTF SLKVRLDRRN NAVDIGCLIG
101: IAMTRNVRKL VLEVYFHRGT FTFPRSLYHC ETLETLELIL NVVMDVPPSV YLKSLKTLYL LAVDFKDDES VINLLSGCPN LQDLVMRRNS SSNVKTFTIA
201: VPSLQRLAIH NGSGTPQHCG YTINTPSLKY LKLEGSKAFE SFMVENVSEL IEVNITDVSE IIDEKLRVFL TSVTRLSLAL SPSVFTFPTG IIFNQLVYLE
301: ICTNKTSWWK LLPLMLHSSP KLQVLKLIDD TDGMNYVEAS GEWNQPKNVP ECLHHLEKFI WEGYKWKREE IEVAKYILKN TNRLKRAIFS LKGISSEDRL
401: VVVEDLKSVV MATTNSCQFQ FI

Arabidopsis Description

RNI-like superfamily protein [Source:TAIR;Acc:AT1G55030]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.