Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015355.1-P | Field mustard | cytosol, extracellular, nucleus | 97.99 | 97.99 |
| CDY00182 | Canola | cytosol | 12.36 | 53.09 |
| CDX88297 | Canola | cytosol | 31.32 | 46.38 |
| CDY13667 | Canola | extracellular, plasma membrane | 35.63 | 44.77 |
| CDX87122 | Canola | cytosol | 45.11 | 41.53 |
| CDX76220 | Canola | endoplasmic reticulum, extracellular | 17.24 | 39.74 |
| CDY65918 | Canola | cytosol | 47.7 | 38.78 |
| CDX89356 | Canola | cytosol, extracellular, mitochondrion, plastid | 40.52 | 38.74 |
| CDY48198 | Canola | cytosol | 12.64 | 38.26 |
| AT3G26922.2 | Thale cress | cytosol | 33.05 | 37.58 |
| CDY00181 | Canola | plasma membrane, plastid, vacuole | 45.98 | 37.56 |
| CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 44.83 | 37.23 |
| CDY37900 | Canola | cytosol, extracellular, nucleus | 13.79 | 37.21 |
| CDX94363 | Canola | cytosol | 38.79 | 37.09 |
| CDX78112 | Canola | cytosol | 44.83 | 36.45 |
| CDX73615 | Canola | cytosol | 39.08 | 36.36 |
| CDY48007 | Canola | plastid | 44.54 | 35.39 |
| CDY63198 | Canola | mitochondrion, plasma membrane | 46.55 | 35.37 |
| CDY37901 | Canola | cytosol | 24.71 | 35.1 |
| CDY48010 | Canola | cytosol | 45.11 | 34.97 |
| CDY69654 | Canola | cytosol | 32.18 | 34.89 |
| CDX83662 | Canola | cytosol, plastid | 41.38 | 34.78 |
| CDX92766 | Canola | cytosol | 20.69 | 34.62 |
| CDY23230 | Canola | cytosol | 41.95 | 34.03 |
| CDY23229 | Canola | cytosol | 41.95 | 34.03 |
| CDY72188 | Canola | cytosol | 41.95 | 34.03 |
| CDX83661 | Canola | cytosol, mitochondrion, nucleus | 39.08 | 34.0 |
| CDY69799 | Canola | cytosol | 35.92 | 32.55 |
| CDY48199 | Canola | extracellular, plasma membrane, vacuole | 44.54 | 32.36 |
| CDX95363 | Canola | cytosol | 38.79 | 32.22 |
| CDY65463 | Canola | cytosol, extracellular, nucleus | 13.79 | 29.63 |
| CDX94344 | Canola | cytosol, peroxisome, plastid | 35.34 | 29.36 |
| CDX89345 | Canola | cytosol, peroxisome, plastid | 34.77 | 29.09 |
| CDY01270 | Canola | extracellular, plasma membrane | 24.14 | 29.07 |
| CDY42742 | Canola | cytosol | 34.2 | 28.27 |
| CDY00432 | Canola | cytosol | 19.83 | 27.6 |
| CDY27513 | Canola | cytosol | 44.54 | 26.77 |
| CDY65306 | Canola | cytosol | 24.71 | 26.54 |
| CDX80649 | Canola | cytosol | 29.89 | 24.07 |
| CDY06036 | Canola | cytosol | 29.6 | 23.84 |
| CDX92699 | Canola | cytosol | 21.26 | 23.64 |
| CDY52334 | Canola | cytosol, nucleus, vacuole | 29.6 | 23.36 |
| CDY30423 | Canola | extracellular, golgi | 11.78 | 18.81 |
| CDX71951 | Canola | plastid | 28.45 | 18.68 |
| CDX92764 | Canola | cytosol, nucleus, plasma membrane | 11.49 | 15.81 |
| CDY41819 | Canola | cytosol | 2.3 | 11.27 |
| CDX71950 | Canola | cytosol | 2.3 | 6.02 |
Protein Annotations
| EnsemblPlants:CDX89785 | EnsemblPlantsGene:GSBRNA2T00150228001 | Gene3D:3.80.10.10 | InterPro:FBD | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_2 | ncoils:Coil | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF234 | PFAM:PF07723 | PFAM:PF08387 |
| ProteinID:CDX89785 | ProteinID:CDX89785.1 | SEG:seg | SMART:SM00579 | SUPFAM:SSF52047 | UniParc:UPI0004EDC006 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA10g02970D
Coordinates
chrLK031861:+:56418..57464
Molecular Weight (calculated)
40111.1 Da
IEP (calculated)
8.446
GRAVY (calculated)
-0.095
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIGMWIGIA YARHVRELIL DVETETRYSN FKFPKCFYNC QTLKTLIIKT WILIDIPSSQ VCLKSLKKLH LCYVDYKDDQ SVVNLLSGCP NLQELVIHRN
101: LQVVRVFTIA VPSLQRLEIY DWSYGHEMVG SYVVNTPSLK YLKIKGFPRL RFSMVEIAPE LVEANVIDLS KVIDKKLMQS LASVKRLSLS LSPSEMITFP
201: NTDLYLSPSE LITFPSTGTI FHQLVHLELS TDKADWWNLL TRMINTSPRL QVLKLIGEWY YGKVGVSCKE GNQPKNVPEC LETFVWNTYK EQQEEEKEVA
301: KYILRNANRL KKASISIKGF NSDERLKLLK ELENVVKASN SPCELLMC
101: LQVVRVFTIA VPSLQRLEIY DWSYGHEMVG SYVVNTPSLK YLKIKGFPRL RFSMVEIAPE LVEANVIDLS KVIDKKLMQS LASVKRLSLS LSPSEMITFP
201: NTDLYLSPSE LITFPSTGTI FHQLVHLELS TDKADWWNLL TRMINTSPRL QVLKLIGEWY YGKVGVSCKE GNQPKNVPEC LETFVWNTYK EQQEEEKEVA
301: KYILRNANRL KKASISIKGF NSDERLKLLK ELENVVKASN SPCELLMC
001: MNNRGAVTDM ISQLPEPLIL QILGSLPTKV AITTSVLSKQ WQSHWKMMPK LEFDSFLRRL DLENVTKCLL SHKAPVLQTF SLKVRLDRRN NAVDIGCLIG
101: IAMTRNVRKL VLEVYFHRGT FTFPRSLYHC ETLETLELIL NVVMDVPPSV YLKSLKTLYL LAVDFKDDES VINLLSGCPN LQDLVMRRNS SSNVKTFTIA
201: VPSLQRLAIH NGSGTPQHCG YTINTPSLKY LKLEGSKAFE SFMVENVSEL IEVNITDVSE IIDEKLRVFL TSVTRLSLAL SPSVFTFPTG IIFNQLVYLE
301: ICTNKTSWWK LLPLMLHSSP KLQVLKLIDD TDGMNYVEAS GEWNQPKNVP ECLHHLEKFI WEGYKWKREE IEVAKYILKN TNRLKRAIFS LKGISSEDRL
401: VVVEDLKSVV MATTNSCQFQ FI
101: IAMTRNVRKL VLEVYFHRGT FTFPRSLYHC ETLETLELIL NVVMDVPPSV YLKSLKTLYL LAVDFKDDES VINLLSGCPN LQDLVMRRNS SSNVKTFTIA
201: VPSLQRLAIH NGSGTPQHCG YTINTPSLKY LKLEGSKAFE SFMVENVSEL IEVNITDVSE IIDEKLRVFL TSVTRLSLAL SPSVFTFPTG IIFNQLVYLE
301: ICTNKTSWWK LLPLMLHSSP KLQVLKLIDD TDGMNYVEAS GEWNQPKNVP ECLHHLEKFI WEGYKWKREE IEVAKYILKN TNRLKRAIFS LKGISSEDRL
401: VVVEDLKSVV MATTNSCQFQ FI
Arabidopsis Description
RNI-like superfamily protein [Source:TAIR;Acc:AT1G55030]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.