CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88297	Canola	cytosol	46.03	83.83
CDY00182	Canola	cytosol	9.11	48.15
CDX89785	Canola	cytosol, extracellular, nucleus	38.78	47.7
AT3G26922.2	Thale cress	cytosol	30.37	42.48
CDX87122	Canola	cytosol	35.28	39.95
CDX83662	Canola	cytosol, plastid	38.55	39.86
CDY00181	Canola	plasma membrane, plastid, vacuole	39.49	39.67
CDX78112	Canola	cytosol	38.78	38.78
CDX83661	Canola	cytosol, mitochondrion, nucleus	36.22	38.75
CDY69654	Canola	cytosol	28.97	38.63
CDY13667	Canola	extracellular, plasma membrane	25.0	38.63
CDY63198	Canola	mitochondrion, plasma membrane	41.12	38.43
CDX73615	Canola	cytosol	33.18	37.97
CDY69799	Canola	cytosol	33.64	37.5
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	36.45	37.23
CDY48010	Canola	cytosol	39.02	37.19
CDY23230	Canola	cytosol	37.15	37.06
CDY23229	Canola	cytosol	37.15	37.06
CDY01270	Canola	extracellular, plasma membrane	25.0	37.02
CDY72188	Canola	cytosol	36.45	36.36
CDY48007	Canola	plastid	36.92	36.07
CDY48199	Canola	extracellular, plasma membrane, vacuole	40.19	35.91
CDX95363	Canola	cytosol	35.05	35.8
CDY48198	Canola	cytosol	9.58	35.65
CDY37900	Canola	cytosol, extracellular, nucleus	10.51	34.88
CDY00432	Canola	cytosol	20.09	34.4
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	28.97	34.07
CDX94344	Canola	cytosol, peroxisome, plastid	32.01	32.7
CDX94363	Canola	cytosol	27.57	32.42
CDX89345	Canola	cytosol, peroxisome, plastid	31.07	31.97
CDY37901	Canola	cytosol	18.22	31.84
CDX71950	Canola	cytosol	9.81	31.58
CDY65306	Canola	cytosol	23.83	31.48
CDY42742	Canola	cytosol	30.14	30.64
CDX76220	Canola	endoplasmic reticulum, extracellular	10.51	29.8
CDX92699	Canola	cytosol	21.26	29.07
CDY52334	Canola	cytosol, nucleus, vacuole	29.67	28.8
CDY27513	Canola	cytosol	38.55	28.5
CDY06036	Canola	cytosol	26.87	26.62
CDX92766	Canola	cytosol	12.85	26.44
CDX80649	Canola	cytosol	26.4	26.16
CDY65463	Canola	cytosol, extracellular, nucleus	8.88	23.46
CDX92764	Canola	cytosol, nucleus, plasma membrane	12.38	20.95
CDX71951	Canola	plastid	22.43	18.11
CDY30423	Canola	extracellular, golgi	7.71	15.14
CDY41819	Canola	cytosol	0.7	4.23

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078JE80	EnsemblPlants:CDY65918	ProteinID:CDY65918	ProteinID:CDY65918.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00051007001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646
PFAM:PF07723	PFAM:PF08387	PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00579
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EEDEE1	SEG:seg	:	:

Description

BnaC01g42870DBnaC01g42870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JE80]

Coordinates

chrLK035001:+:4826..6112

Molecular Weight (calculated)

50018.7 Da

IEP (calculated)

8.310

GRAVY (calculated)

-0.197

Length

428 amino acids

Sequence
(BLAST)

001: MQNVLSKRCW RNDEGMDMIS KLPQARVFQI LSLLPQRDVV ATSVLSKQWN AIWKMVSKLE FDYQHYGDGE TFSDNVCSVL ISSKAPVLES LRLRFSIDSS
101: APVDIELWIS IAYLHRVCEL ELDVVGPSSF KLPANYLFYR DLDTLKLKNF VLVDCPDQDR HRKYYMRTLH LCYVNCKNDD SVANFLSGCH VLENLVVSRC
201: RWDHVKTFTI AVPTLQRLEI CDWNWNGQER EQEFGDYEIN APCLKYLKIK GTRDIRFRLV DQMIANSCTS DNQDLWRIRN FSLSYRSSLI SEIAFPKYTI
301: FHQLVYLELC TSQAMWCNLL TLIINTCPRL QVLKLIGCGW DNRKVFAGRW ITPKNVPECL ETFVWNCCKE QQEKEKGVVK YILRNANRLK KARIIMKEFS
401: SQERLKMLEE FKSVVKASNS SCNILVVE

Best Arabidopsis Sequence Match ( AT1G55030.1 )
(BLAST)

001: MNNRGAVTDM ISQLPEPLIL QILGSLPTKV AITTSVLSKQ WQSHWKMMPK LEFDSFLRRL DLENVTKCLL SHKAPVLQTF SLKVRLDRRN NAVDIGCLIG
101: IAMTRNVRKL VLEVYFHRGT FTFPRSLYHC ETLETLELIL NVVMDVPPSV YLKSLKTLYL LAVDFKDDES VINLLSGCPN LQDLVMRRNS SSNVKTFTIA
201: VPSLQRLAIH NGSGTPQHCG YTINTPSLKY LKLEGSKAFE SFMVENVSEL IEVNITDVSE IIDEKLRVFL TSVTRLSLAL SPSVFTFPTG IIFNQLVYLE
301: ICTNKTSWWK LLPLMLHSSP KLQVLKLIDD TDGMNYVEAS GEWNQPKNVP ECLHHLEKFI WEGYKWKREE IEVAKYILKN TNRLKRAIFS LKGISSEDRL
401: VVVEDLKSVV MATTNSCQFQ FI

Arabidopsis Description

RNI-like superfamily protein [Source:TAIR;Acc:AT1G55030]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.