Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71950 | Canola | cytosol | 27.47 | 66.92 |
| CDY52334 | Canola | cytosol, nucleus, vacuole | 90.12 | 66.21 |
| CDY06036 | Canola | cytosol | 74.07 | 55.56 |
| CDX80649 | Canola | cytosol | 70.68 | 53.01 |
| CDX94344 | Canola | cytosol, peroxisome, plastid | 50.62 | 39.14 |
| CDX89345 | Canola | cytosol, peroxisome, plastid | 49.07 | 38.22 |
| CDY65463 | Canola | cytosol, extracellular, nucleus | 18.21 | 36.42 |
| CDY42742 | Canola | cytosol | 46.3 | 35.63 |
| AT4G26350.1 | Thale cress | cytosol | 45.06 | 33.87 |
| CDX92699 | Canola | cytosol | 32.72 | 33.87 |
| CDY01270 | Canola | extracellular, plasma membrane | 29.01 | 32.53 |
| CDY37901 | Canola | cytosol | 23.77 | 31.43 |
| CDY69799 | Canola | cytosol | 36.73 | 30.99 |
| CDX71951 | Canola | plastid | 49.07 | 30.0 |
| CDX73615 | Canola | cytosol | 33.33 | 28.88 |
| CDX83661 | Canola | cytosol, mitochondrion, nucleus | 34.88 | 28.25 |
| CDX78112 | Canola | cytosol | 37.04 | 28.04 |
| CDY00181 | Canola | plasma membrane, plastid, vacuole | 36.73 | 27.93 |
| CDX95363 | Canola | cytosol | 35.8 | 27.68 |
| CDY23230 | Canola | cytosol | 36.42 | 27.51 |
| CDY23229 | Canola | cytosol | 36.42 | 27.51 |
| CDY69654 | Canola | cytosol | 27.16 | 27.41 |
| CDX83662 | Canola | cytosol, plastid | 34.88 | 27.29 |
| CDY72188 | Canola | cytosol | 36.11 | 27.27 |
| CDY48010 | Canola | cytosol | 37.35 | 26.95 |
| CDX89356 | Canola | cytosol, extracellular, mitochondrion, plastid | 30.25 | 26.92 |
| CDX94363 | Canola | cytosol | 30.25 | 26.92 |
| CDY48007 | Canola | plastid | 35.19 | 26.03 |
| CDX92766 | Canola | cytosol | 16.67 | 25.96 |
| CDY63198 | Canola | mitochondrion, plasma membrane | 36.11 | 25.55 |
| CDX87122 | Canola | cytosol | 29.63 | 25.4 |
| CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 32.72 | 25.3 |
| CDX89785 | Canola | cytosol, extracellular, nucleus | 26.54 | 24.71 |
| CDY48199 | Canola | extracellular, plasma membrane, vacuole | 36.11 | 24.43 |
| CDY65918 | Canola | cytosol | 31.48 | 23.83 |
| CDY00432 | Canola | cytosol | 18.21 | 23.6 |
| CDX92764 | Canola | cytosol, nucleus, plasma membrane | 17.28 | 22.13 |
| CDY13667 | Canola | extracellular, plasma membrane | 18.83 | 22.02 |
| CDY27513 | Canola | cytosol | 37.04 | 20.73 |
| CDX88297 | Canola | cytosol | 14.81 | 20.43 |
| CDY30423 | Canola | extracellular, golgi | 7.72 | 11.47 |
| CDY00182 | Canola | cytosol | 2.78 | 11.11 |
| CDX76220 | Canola | endoplasmic reticulum, extracellular | 4.63 | 9.93 |
| CDY48198 | Canola | cytosol | 3.09 | 8.7 |
| CDY41819 | Canola | cytosol | 1.54 | 7.04 |
| CDY37900 | Canola | cytosol, extracellular, nucleus | 2.78 | 6.98 |
Protein Annotations
| EnsemblPlants:CDY65306 | EnsemblPlantsGene:GSBRNA2T00045566001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR32212 | PFAM:PF00646 | ProteinID:CDY65306 | ProteinID:CDY65306.1 |
| SEG:seg | SUPFAM:SSF52058 | SUPFAM:SSF81383 | UniParc:UPI0004EE073D | UniProt:A0A078JHX6 | MapMan:35.1 |
Description
BnaCnng46540DBnaCnng46540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHX6]
Coordinates
chrLK034724:-:23937..25000
Molecular Weight (calculated)
36813.9 Da
IEP (calculated)
5.942
GRAVY (calculated)
0.224
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMISQLSDD LLIRILSLVP TKHVMATCCL SKRWLLFWSL VPKLEYDDSS YSDENYATFT KFVYGSLMSN KAPVLESLTL TLGPNFQAID VGIWIETAVC
101: HRVHAIIVNT LPYEEKGTMI SLPSSIYTCE TLETLELSGC FCLNDIPFSV CLPSLKTLEI INVEVSSLTR LLSGCPNLDH LVVHREDIDV DIVVPSLRKL
201: NMVNYTGGQK GSGFVIDARS LVSLYIKDDV FNDYHRIEYM PKLEEAYVDI TCGVRDHKFL KAFTCARALS LCLSFLEVLS PRSMIFHNLV YLTLNTCVHG
301: WWDLVTHMLQ DSPKLRFLKL HDVR
101: HRVHAIIVNT LPYEEKGTMI SLPSSIYTCE TLETLELSGC FCLNDIPFSV CLPSLKTLEI INVEVSSLTR LLSGCPNLDH LVVHREDIDV DIVVPSLRKL
201: NMVNYTGGQK GSGFVIDARS LVSLYIKDDV FNDYHRIEYM PKLEEAYVDI TCGVRDHKFL KAFTCARALS LCLSFLEVLS PRSMIFHNLV YLTLNTCVHG
301: WWDLVTHMLQ DSPKLRFLKL HDVR
001: MISPTMEQGE SLRIRVVMGK DRISELPDGL LLKILSSLPT NIVVATSVLS KQWRSLWKLV PNLEFDSDDY ESEHYTFSEI VCKSFLSHKA PVLESFRLKF
101: VNFNPVDIGL WVGIAFSRHL RELVLDFYPA ELGKGVTFTF PSSLCTCNTL ETLKLVLCIL VDIPSPVLMK SLRTLHLEFV RYKDESSVRN LLSGCPGLEE
201: LRLYRGDDSD IKVFTIEVPS LQRLTIHDNN DGPEFWGYVI NAPFLKYLLI EELRCPEFCL NAPELVEANI AEVTSITIEK FLGSFTSVSR LLLNLSPLKI
301: TYPTGSMFYQ LVSLEMYTRE AEWWNLLTLM LENSPKLQVL KLTDRSQNFH KDGLVSGKWN EPKDVPECLL SQLETFVWRR FDWGREEEKE IATYILKNGR
401: RLKKATFSTN PIESEELNKL KERRKVLNGL DGVVRASNSC QLVFKFDPSY LGSDSP
101: VNFNPVDIGL WVGIAFSRHL RELVLDFYPA ELGKGVTFTF PSSLCTCNTL ETLKLVLCIL VDIPSPVLMK SLRTLHLEFV RYKDESSVRN LLSGCPGLEE
201: LRLYRGDDSD IKVFTIEVPS LQRLTIHDNN DGPEFWGYVI NAPFLKYLLI EELRCPEFCL NAPELVEANI AEVTSITIEK FLGSFTSVSR LLLNLSPLKI
301: TYPTGSMFYQ LVSLEMYTRE AEWWNLLTLM LENSPKLQVL KLTDRSQNFH KDGLVSGKWN EPKDVPECLL SQLETFVWRR FDWGREEEKE IATYILKNGR
401: RLKKATFSTN PIESEELNKL KERRKVLNGL DGVVRASNSC QLVFKFDPSY LGSDSP
Arabidopsis Description
F-box/FBD/LRR-repeat protein At3g52680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXJ6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.