CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27513	Canola	cytosol	92.24	69.78
CDY48010	Canola	cytosol	69.18	67.48
CDY48198	Canola	cytosol	16.44	62.61
CDY69654	Canola	cytosol	38.36	52.34
CDY69799	Canola	cytosol	44.06	50.26
CDY37901	Canola	cytosol	26.94	48.16
CDY37900	Canola	cytosol, extracellular, nucleus	14.16	48.06
CDY48199	Canola	extracellular, plasma membrane, vacuole	52.28	47.81
CDY13667	Canola	extracellular, plasma membrane	30.14	47.65
CDX73615	Canola	cytosol	40.64	47.59
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	45.43	47.49
CDX78112	Canola	cytosol	46.12	47.2
CDX87122	Canola	cytosol	39.5	45.77
CDY00432	Canola	cytosol	26.03	45.6
CDY00181	Canola	plasma membrane, plastid, vacuole	43.84	45.07
CDX89785	Canola	cytosol, extracellular, nucleus	35.39	44.54
CDY72188	Canola	cytosol	42.92	43.82
CDY23229	Canola	cytosol	42.92	43.82
CDX83661	Canola	cytosol, mitochondrion, nucleus	39.95	43.75
CDY23230	Canola	cytosol	42.69	43.59
CDX95363	Canola	cytosol	41.1	42.96
CDY01270	Canola	extracellular, plasma membrane	28.08	42.56
CDX83662	Canola	cytosol, plastid	40.18	42.51
CDY63198	Canola	mitochondrion, plasma membrane	44.06	42.14
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	34.93	42.03
CDY00182	Canola	cytosol	7.76	41.98
CDX94363	Canola	cytosol	34.25	41.21
CDX76220	Canola	endoplasmic reticulum, extracellular	13.7	39.74
CDX92766	Canola	cytosol	18.49	38.94
CDX88297	Canola	cytosol	20.32	37.87
CDX94344	Canola	cytosol, peroxisome, plastid	35.39	36.99
CDY65918	Canola	cytosol	36.07	36.92
CDX89345	Canola	cytosol, peroxisome, plastid	34.47	36.3
CDY42742	Canola	cytosol	34.7	36.1
CDX92699	Canola	cytosol	25.34	35.46
CDY65306	Canola	cytosol	26.03	35.19
CDY52334	Canola	cytosol, nucleus, vacuole	31.96	31.75
CDX80649	Canola	cytosol	31.05	31.48
CDY65463	Canola	cytosol, extracellular, nucleus	11.64	31.48
CDY06036	Canola	cytosol	30.59	31.02
CDX71950	Canola	cytosol	8.68	28.57
CDX92764	Canola	cytosol, nucleus, plasma membrane	13.24	22.92
CDX71951	Canola	plastid	26.94	22.26
CDY30423	Canola	extracellular, golgi	9.82	19.72
CDY41819	Canola	cytosol	2.05	12.68

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078ID46	EnsemblPlants:CDY48007	ProteinID:CDY48007	ProteinID:CDY48007.1
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00088652001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646	PFAM:PF07723
PFAM:PF08387	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00579	SUPFAM:SSF52058	UniParc:UPI0004EEC79F
SEG:seg	:	:	:	:	:

Description

BnaA04g26830DBnaA04g26830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ID46]

Coordinates

chrLK032749:+:35396..36892

Molecular Weight (calculated)

50252.8 Da

IEP (calculated)

8.194

GRAVY (calculated)

-0.016

Length

438 amino acids

Sequence
(BLAST)

001: MQILSSLATK NVIATSVLSK GWRSLWKKVP SIKFDSWYHK TEPHRFSEIV YKSLLSYNSP VLDSFYLVDI CVSEVSDDIT IWIGIAFARH VRKLVLKLLL
101: DEKYYGNLIR FPSVFCNCNN TLDTLEISKL FLLDFPSRVG LKSLKKLHLS YVNFRDDESV CNLLCGCASL EDLVVQRRGS YDGVITFTIA VPSLQRLTIV
201: DTFRGTCRGG YVINAPSLKY LNIKGVGTHR TESYGFCLIE NAPELVEAKI TGFTDINLHN ENIFVSLTSA KRLSFDFSPF KVQFKVLTDG ITFYQLVSLE
301: LNTSKSEWSK LLARMLDSSP KLQILKLVNI AYLYHDNKVS TFPLAGDWEQ RPKCVPECLL FHLETLMWTG YIWDRKDDRE VATYILKNAR HLKKATFYTE
401: PIQLEYFQTL EEKHEMLNEL ASVVRVSSSC HLVFESSN

Best Arabidopsis Sequence Match ( AT3G49020.1 )
(BLAST)

001: MEQKCKIGGE GLRNRGLVNE EDRISELPEA LLLLILSSLP TETVIATSVL SKQWKSLWKL VPNLKFDSKY HYHYTFSDNV FRSLISHKAP VLDSLHLKVE
101: DKDDALDVGI LIGIAFSRHM RKFVLKITLL EESFVRFPSA WCSCNDTLEI LELKYCILLD FPSLVCLKSL RKLYLYHVRF NDEESVCNLL CGCPSLEDLV
201: VHRHSTTDVE SYTIAVPSLQ RLTIYDDYYG EGVGGYVINA PSLKYLNIDG FNGLEFCLIE KAPELVEAKI SAVFEIANEN IMDSLTSAKC LSLHLAPFKI
301: KYPTGKIFYQ LLSLELRAYS YEWWNLLWFM LDSSPKLQIL KLVDPYQFPK EDCSVGWEWS RPKCVPECLL FHLETFVWTR YEWQREDEKA VATYILKNAR
401: CLKKATLSTK PIGSEELEKL GKRREMLNEL ATQASPSNSC NLVFESE

Arabidopsis Description

FBD-associated F-box protein At3g49020 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMT9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.