CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019111.1-P	Field mustard	cytosol	86.22	96.54
CDX92699	Canola	cytosol	50.83	68.37
CDX92766	Canola	cytosol	30.4	61.54
AT4G26340.1	Thale cress	cytosol	59.14	59.43
CDX94344	Canola	cytosol, peroxisome, plastid	58.43	58.71
CDX89345	Canola	cytosol, peroxisome, plastid	56.77	57.45
CDY65306	Canola	cytosol	35.63	46.3
CDX92764	Canola	cytosol, nucleus, plasma membrane	27.79	46.25
CDX71950	Canola	cytosol	14.25	45.11
CDY52334	Canola	cytosol, nucleus, vacuole	47.03	44.9
CDY06036	Canola	cytosol	45.84	44.68
CDX80649	Canola	cytosol	45.61	44.44
CDX73615	Canola	cytosol	35.39	39.84
CDY65463	Canola	cytosol, extracellular, nucleus	14.96	38.89
CDX78112	Canola	cytosol	38.72	38.08
CDX83662	Canola	cytosol, plastid	37.29	37.92
CDY13667	Canola	extracellular, plasma membrane	24.94	37.91
CDY00181	Canola	plasma membrane, plastid, vacuole	37.53	37.09
CDY01270	Canola	extracellular, plasma membrane	25.18	36.68
CDX83661	Canola	cytosol, mitochondrion, nucleus	34.44	36.25
CDY69654	Canola	cytosol	27.08	35.51
CDX87122	Canola	cytosol	31.83	35.45
CDY48010	Canola	cytosol	37.77	35.41
CDY23230	Canola	cytosol	35.63	34.97
CDY23229	Canola	cytosol	35.63	34.97
CDY72188	Canola	cytosol	35.63	34.97
CDY48198	Canola	cytosol	9.5	34.78
CDY48007	Canola	plastid	36.1	34.7
CDY00182	Canola	cytosol	6.65	34.57
CDX94363	Canola	cytosol	29.69	34.34
CDX89785	Canola	cytosol, extracellular, nucleus	28.27	34.2
CDY37900	Canola	cytosol, extracellular, nucleus	10.45	34.11
CDX95363	Canola	cytosol	33.73	33.89
CDY69799	Canola	cytosol	30.88	33.85
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	29.22	33.79
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	33.49	33.65
CDY63198	Canola	mitochondrion, plasma membrane	35.87	32.97
CDY37901	Canola	cytosol	19.0	32.65
CDY00432	Canola	cytosol	19.24	32.4
CDY48199	Canola	extracellular, plasma membrane, vacuole	36.58	32.15
CDX76220	Canola	endoplasmic reticulum, extracellular	11.4	31.79
CDX88297	Canola	cytosol	17.58	31.49
CDY65918	Canola	cytosol	30.64	30.14
CDX71951	Canola	plastid	35.15	27.92
CDY27513	Canola	cytosol	37.29	27.12
CDY30423	Canola	extracellular, golgi	8.79	16.97
CDY41819	Canola	cytosol	1.66	9.86

Protein Annotations

EnsemblPlants:CDY42742	EnsemblPlantsGene:GSBRNA2T00075285001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212
PFAM:PF07723	PFAM:PF08387	ProteinID:CDY42742	ProteinID:CDY42742.1	SEG:seg	SMART:SM00579
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE865B	UniProt:A0A078HXZ2	MapMan:35.1	:

Description

BnaA03g47970DBnaA03g47970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXZ2]

Coordinates

chrLK032533:-:48573..50009

Molecular Weight (calculated)

47625.9 Da

IEP (calculated)

7.782

GRAVY (calculated)

0.014

Length

421 amino acids

Sequence
(BLAST)

001: MDNLSHLLDD LLLRILSLNT TKEAMATSLL SKRWRSLWTL VPGLSYDHSN HNGDYKSFTQ FVYRSFLSNK APILKHLHLS LGPDCPSVDI GLWINLALSR
101: RVGELHIHIV IPYPKKVSVT LPSSLYTSEN LQRLSLTNCV FLDGPVHVLL PSLKTLSLKT VTYTDNTSLQ IFLSGCPNLE VLSVEDRYDG PPMDVIVVVP
201: SLQRLHMSHG NIETRGTYVL DVPSLKSLEI RDSARCNFRQ IENMPELVNA RVCFGASSTH EFLKALTSVR RLTLTQPLTL KSEVVNPCGI IFNQLVHLDL
301: RTFAVGWWDL LICMLQYSPN LRFLKLIDVA IYFSDMDNPS GWKPPSSVPE CLLHSVEAFE WFQYKGRQVD REMATYVLKN ALRLKTATFS TRLTDMGEKC
401: QMLKELESVA TASPSAQILF D

Best Arabidopsis Sequence Match ( AT4G26340.1 )
(BLAST)

001: MDRISQLSDD LLLQILSFIP GKDVVATSLL SKRWQSLWML VSELEYDDSY HTGDYKSFSQ FVYRSLLSNN APVIKHLHLN LGPDCPAIDI GLWIGFALTR
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD

Arabidopsis Description

F-box/FBD/LRR-repeat protein At4g26340 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1R7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.