Factsheet for Bra019111.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42742	Canola	cytosol	96.54	86.22
AT4G26340.1	Thale cress	cytosol	58.78	52.74
Bra026446.1-P	Field mustard	cytosol	56.65	51.08
Bra007575.1-P	Field mustard	extracellular, vacuole	45.74	39.0
Bra007397.1-P	Field mustard	cytosol	44.15	38.43
Bra025236.1-P	Field mustard	cytosol	35.37	36.14
Bra019575.1-P	Field mustard	cytosol	21.01	33.47
Bra006939.1-P	Field mustard	cytosol	29.26	33.33
Bra034324.1-P	Field mustard	cytosol	9.31	30.43
Bra026459.1-P	Field mustard	cytosol, nucleus, plastid	34.84	29.98
Bra034248.1-P	Field mustard	golgi, mitochondrion, plasma membrane	34.84	29.91
Bra015355.1-P	Field mustard	cytosol, extracellular, nucleus	26.33	28.45
Bra023272.1-P	Field mustard	cytosol	26.33	26.61
Bra040480.1-P	Field mustard	cytosol	36.7	25.23

Protein Annotations

EnsemblPlants:Bra019111.1	EnsemblPlants:Bra019111.1-P	EnsemblPlantsGene:Bra019111	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2
PANTHER:PTHR32212	PFAM:PF07723	PFAM:PF08387	SEG:seg	SMART:SM00579	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI00025411D8	UniProt:M4DRG8	MapMan:35.1	:	:

Description

AT4G26340 (E=2e-067) | F-box family protein

Coordinates

chrA03:+:26283057..26284493

Molecular Weight (calculated)

42354.3 Da

IEP (calculated)

7.851

GRAVY (calculated)

-0.073

Length

376 amino acids

Sequence
(BLAST)

001: MDNLSHLLDD LLLRILSLNT TKEAMATSLL SKRWRSLWTL VPGLSYDHSN HNGDYKSFTQ FVYRSFLSNK APILKHLHLS LGPDCPSVDI GLWINLALSR
101: RVGELHIHIV IPYPKKVSVT LPSSLYTSEN LQRLSLTNCV FLDGPVHVLL PSLKTLSLKT VTYTDNTSLQ IFLSGCPNLE VLSVEDRYDG PPMDVIVVVP
201: SLQRLHMSHG NIETRGTYVL DVPSLKSLEI RDSARCNFRQ IENMPELVNA RVCFGASSTH EFLKALTSVR RLTLTQPLTL KSEVAIYFSD MDNPSGWKPP
301: SSVPECLLHS VEAFEWFQYK GRQVDREMAT YVLKNALRLK TATFSTRLTD MGEKCQMLKE LESVATASPS AQILFD

Best Arabidopsis Sequence Match ( AT4G26340.1 )
(BLAST)

001: MDRISQLSDD LLLQILSFIP GKDVVATSLL SKRWQSLWML VSELEYDDSY HTGDYKSFSQ FVYRSLLSNN APVIKHLHLN LGPDCPAIDI GLWIGFALTR
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD

Arabidopsis Description

F-box/FBD/LRR-repeat protein At4g26340 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1R7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.