Factsheet for Bra006939.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78112	Canola	cytosol	87.58	67.52
CDX73615	Canola	cytosol	66.97	59.09
Bra019575.1-P	Field mustard	cytosol	30.91	43.22
AT4G00160.1	Thale cress	cytosol	53.94	39.29
AT3G52680.1	Thale cress	cytosol	53.94	39.04
Bra025236.1-P	Field mustard	cytosol	36.06	32.34
Bra034248.1-P	Field mustard	golgi, mitochondrion, plasma membrane	40.91	30.82
Bra019111.1-P	Field mustard	cytosol	33.33	29.26
Bra026446.1-P	Field mustard	cytosol	35.45	28.06
Bra015355.1-P	Field mustard	cytosol, extracellular, nucleus	29.09	27.59
Bra026459.1-P	Field mustard	cytosol, nucleus, plastid	34.55	26.09
Bra040480.1-P	Field mustard	cytosol	41.82	25.23
Bra023272.1-P	Field mustard	cytosol	27.58	24.46
Bra007397.1-P	Field mustard	cytosol	31.82	24.31
Bra007575.1-P	Field mustard	extracellular, vacuole	32.42	24.26
Bra034324.1-P	Field mustard	cytosol	1.82	5.22

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra006939	EnsemblPlants:Bra006939.1	EnsemblPlants:Bra006939.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	UniProt:M4CRU7
PFAM:PF00646	PFAM:PF07723	PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00256
SUPFAM:SSF52047	SUPFAM:SSF81383	TMHMM:TMhelix	UniParc:UPI0002542E3F	SEG:seg	:

Description

AT4G00160 (E=2e-080) | F-box family protein

Coordinates

chrA09:+:26348971..26349963

Molecular Weight (calculated)

38265.6 Da

IEP (calculated)

4.914

GRAVY (calculated)

0.210

Length

330 amino acids

Sequence
(BLAST)

001: MNKDMISHLP EDLIRKILSF LPTKTAIATS LLSKQWRSHW MSAPKLRFDS EDYENEHDEN FSKIVSESFL SHKAPVLESF HLRFGLDKVD PIDVGFWIGI
101: AFARQLRKLV LDFLELQESF IFPSSLCTCK TLETLKLRNQ ILLDISSPAS MKSLKKLHLS YVFYKDDETI NNLLSGCPSL EELIVDRSDE HTVEFFTINV
201: PSLLRLTIYD DNSEKEFLGY LIEAPSLKYL EIDELRCKLF LLEAPELVEA NIYGVPAIIS SEFHVSLTSV KRLVLDVSPL KVNLWFIFTL DFFFDNFFLL
301: LSHCLFILLI CLMDRLYTLL LEISSINWCI

Best Arabidopsis Sequence Match ( AT3G52680.2 )
(BLAST)

001: MISPTMEQGE SLRIRVVMGK DRISELPDGL LLKILSSLPT NIVVATSVLS KQWRSLWKLV PNLEFDSDDY ESEHYTFSEI VCKSFLSHKA PVLESFRLKF
101: VNFNPVDIGL WVGIAFSRHL RELVLDFYPA ELGKGVTFTF PSSLCTCNTL ETLKLVLCIL VDIPSPVLMK SLRTLHLEFV RYKDESSVRN LLSGCPGLEE
201: LRLYRGDDSD IKVFTIEVPS LQRLTIHDNN DGPEFWGYVI NAPFLKYLLI EELRCPEFCL NAPELVEANI AEVTSITIEK FLGSFTSVSR LLLNLSPLKI
301: TYPTGSMFYQ LVSLEMYTRE AEWWNLLTLM LENSPKLQVL KLTDVRHFII SQLAIFYGLG NAIH

Arabidopsis Description

F-box/FBD/LRR-repeat protein At3g52680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXJ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.