CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73615	Canola	cytosol	80.84	92.51
Bra006939.1-P	Field mustard	cytosol	67.52	87.58
CDY23229	Canola	cytosol	61.92	61.77
CDY72188	Canola	cytosol	60.98	60.84
CDY23230	Canola	cytosol	60.51	60.37
CDX95363	Canola	cytosol	57.48	58.71
AT4G00160.1	Thale cress	cytosol	60.51	57.17
CDX76220	Canola	endoplasmic reticulum, extracellular	20.09	56.95
AT3G52680.1	Thale cress	cytosol	60.28	56.58
CDY48198	Canola	cytosol	14.95	55.65
CDY69654	Canola	cytosol	36.22	48.29
CDX87122	Canola	cytosol	42.52	48.15
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	45.33	46.3
CDY48007	Canola	plastid	47.2	46.12
CDY00181	Canola	plasma membrane, plastid, vacuole	45.79	46.01
CDY48010	Canola	cytosol	47.9	45.66
CDY69799	Canola	cytosol	40.42	45.05
CDX89785	Canola	cytosol, extracellular, nucleus	36.45	44.83
CDY00182	Canola	cytosol	8.41	44.44
CDY37900	Canola	cytosol, extracellular, nucleus	13.32	44.19
CDY13667	Canola	extracellular, plasma membrane	28.27	43.68
CDY01270	Canola	extracellular, plasma membrane	29.21	43.25
CDX83661	Canola	cytosol, mitochondrion, nucleus	40.42	43.25
CDX83662	Canola	cytosol, plastid	41.82	43.24
CDY00432	Canola	cytosol	25.0	42.8
CDY48199	Canola	extracellular, plasma membrane, vacuole	47.9	42.8
CDY63198	Canola	mitochondrion, plasma membrane	45.56	42.58
CDY37901	Canola	cytosol	24.07	42.04
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	34.35	40.38
CDX94344	Canola	cytosol, peroxisome, plastid	39.02	39.86
CDX88297	Canola	cytosol	21.73	39.57
CDX92699	Canola	cytosol	28.74	39.3
CDX94363	Canola	cytosol	33.41	39.29
CDX89345	Canola	cytosol, peroxisome, plastid	37.85	38.94
CDY65918	Canola	cytosol	38.78	38.78
CDY42742	Canola	cytosol	38.08	38.72
CDY65306	Canola	cytosol	28.04	37.04
CDX92766	Canola	cytosol	17.76	36.54
CDY27513	Canola	cytosol	49.07	36.27
CDX71950	Canola	cytosol	10.51	33.83
CDX80649	Canola	cytosol	33.88	33.56
CDY52334	Canola	cytosol, nucleus, vacuole	34.35	33.33
CDY06036	Canola	cytosol	33.41	33.1
CDY65463	Canola	cytosol, extracellular, nucleus	12.15	32.1
CDX92764	Canola	cytosol, nucleus, plasma membrane	14.25	24.11
CDX71951	Canola	plastid	27.8	22.45
CDY30423	Canola	extracellular, golgi	9.58	18.81
CDY41819	Canola	cytosol	2.34	14.08

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX78112	ProteinID:CDX78112	ProteinID:CDX78112.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00129408001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646	PFAM:PF07723
PFAM:PF08387	PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00256	SMART:SM00579
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EEA690	SEG:seg	:	:

Description

BnaA09g33070D

Coordinates

chrLK031814:+:1170497..1171977

Molecular Weight (calculated)

49834.5 Da

IEP (calculated)

7.309

GRAVY (calculated)

-0.194

Length

428 amino acids

Sequence
(BLAST)

001: MNKDMISHLP EDLIRKILSF LPTKTAIATS LLSKQWRSHW MSAPKLRFDS EDYENEHDEN FSKIVSESFL SHKAPVLESF HLRFGLDKVD PIDVGFWIGI
101: AFARQLRKLV LDFLELQGSF IFPSSLCTCK TLETLKLRNQ ILLDISSPAS MKSLKKLHLS YVFYKDDETI NNLLSGCPSL EELIVDRSDE HTVEFFTINV
201: PSLLRLTIYD DNSEKEFLGY LIEAPSLKYL EIDELRCKLF LLEAPELVEA NIYGVPAIIS SEFHVSLTSV KRLVLDVSPL KTIYPPIGDI FNQLVYLEMY
301: TREALWWDLL RRMLEHSPKL QVLKLVDEYR INPDYRVCGR EWKKPKYVPK CLLSHLETFV WTRYDARREN EEEVATYILK NAKQLKSANF SANPIKPKEL
401: KKLAERREMF RKLDGVVKAS TSCHLVFK

Best Arabidopsis Sequence Match ( AT4G00160.1 )
(BLAST)

001: MEQGESLRIR VVMGKDRISE LPDALLIKIL SFLPTKIVVA TSVFSKQWRP LWKLVPNLEF DSEDYDDKEQ YTFSEIVCKS FLSHKAPVLE SFRLEFESEK
101: VDPVDIGLWV GIAFSRHLRE LVLVAADTGT GTAFKFPSSL CTCNTLETLR LVLLILVDIS SPVVMKSLRT LHLELVSYKD ESSIRNLLSG CPILEELLVI
201: RGEDSDIEVF TIDEVPSLKR LTINDDHDGQ EFWGYVINAP SLKYLLIEDL RCPGFCLNAP ELMEANIFDG TSITNDNFLG YLTSVKRLLL NLSPWKITYP
301: TGSIFYQLVS LEMYTREIDW WDLLTLMLEH SPKLQVLKLT DNCVKFHKNG LPGGKWNEPK YVPECLLSHL ETFVWRRFDW GREEEKEIAT YILKNARRLN
401: KATFSTNPVN SEELDKLKER RKVHNELDGV VRASNSCQFV FKFDTSYHVS DSS

Arabidopsis Description

F-box/FBD/LRR-repeat protein At4g00160 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.