CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72188	Canola	cytosol	94.03	91.84
CDY23229	Canola	cytosol	94.03	91.84
CDY23230	Canola	cytosol	93.32	91.14
CDX76220	Canola	endoplasmic reticulum, extracellular	25.06	69.54
CDX78112	Canola	cytosol	58.71	57.48
CDX73615	Canola	cytosol	50.84	56.95
AT4G00160.1	Thale cress	cytosol	52.51	48.57
AT3G52680.1	Thale cress	cytosol	52.74	48.46
CDY00182	Canola	cytosol	9.31	48.15
CDY48198	Canola	cytosol	12.89	46.96
CDY69654	Canola	cytosol	34.84	45.48
CDY69799	Canola	cytosol	38.19	41.67
CDY48007	Canola	plastid	42.96	41.1
CDX87122	Canola	cytosol	36.99	41.01
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	40.1	40.1
CDY48010	Canola	cytosol	42.96	40.09
CDY00181	Canola	plasma membrane, plastid, vacuole	39.86	39.2
CDY48199	Canola	extracellular, plasma membrane, vacuole	44.39	38.83
CDX89785	Canola	cytosol, extracellular, nucleus	32.22	38.79
CDY01270	Canola	extracellular, plasma membrane	26.73	38.75
CDY13667	Canola	extracellular, plasma membrane	25.54	38.63
CDY37900	Canola	cytosol, extracellular, nucleus	11.69	37.98
CDX83662	Canola	cytosol, plastid	37.23	37.68
CDY37901	Canola	cytosol	21.96	37.55
CDX83661	Canola	cytosol, mitochondrion, nucleus	35.32	37.0
CDX94344	Canola	cytosol, peroxisome, plastid	36.52	36.52
CDY63198	Canola	mitochondrion, plasma membrane	39.86	36.46
CDX88297	Canola	cytosol	20.29	36.17
CDY00432	Canola	cytosol	21.48	36.0
CDX89345	Canola	cytosol, peroxisome, plastid	35.56	35.82
CDY65306	Canola	cytosol	27.68	35.8
CDX92699	Canola	cytosol	26.73	35.78
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	30.79	35.44
CDY65918	Canola	cytosol	35.8	35.05
CDX94363	Canola	cytosol	30.07	34.62
CDY42742	Canola	cytosol	33.89	33.73
CDX92766	Canola	cytosol	16.23	32.69
CDY52334	Canola	cytosol, nucleus, vacuole	34.37	32.65
CDY27513	Canola	cytosol	43.91	31.78
CDX71950	Canola	cytosol	10.02	31.58
CDY06036	Canola	cytosol	31.5	30.56
CDX80649	Canola	cytosol	30.31	29.4
CDY65463	Canola	cytosol, extracellular, nucleus	10.74	27.78
CDX71951	Canola	plastid	28.16	22.26
CDX92764	Canola	cytosol, nucleus, plasma membrane	12.65	20.95
CDY30423	Canola	extracellular, golgi	9.31	17.89
CDY41819	Canola	cytosol	2.15	12.68

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX95363	ProteinID:CDX95363	ProteinID:CDX95363.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00101063001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646	PFAM:PF07723
PFAM:PF08387	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0004EEA626	SEG:seg	:	:	:	:

Description

BnaC04g27950D

Coordinates

chrLK031888:+:679885..681320

Molecular Weight (calculated)

48400.6 Da

IEP (calculated)

6.597

GRAVY (calculated)

-0.086

Length

419 amino acids

Sequence
(BLAST)

001: MAEEMNIGQL DENLILKILS LVPIKTVVST SVLSKEWQSC WKSVPKLKFN SEDYQSEHQT FSETVYKSLL SYEPEVLDSF HLSFGSDKAD AVDVVHWIKT
101: AFALHLRTLV LEFLIYPYEV DEFIFTSSLC TCDTLETLKL GSLILVDIPA RGSMKSLKTL HLIHAFYTND ESICNLLSGC PRLEELVVER TCEYSVKFFT
201: IKVPSLQRFR IYDDNDEDEF VGYVIDTPSL KYLEIGYLGC PQFSLNALGL LAVYIARVSN VISESLVSVR RLVLNVSTSM TIYPPTGCIF YQLVYLQIYT
301: PEPGWYDLLT WMLEHSPKLQ VLKLVGKYRI KPDYHVLGWE WNKPKSVPEC LLSHLETFVW RRYDWKREKE EEVATYLLKN ARGLKNATFS TGPIEPGQLD
401: KLKQRRRTRK KIGWCAQGF

Best Arabidopsis Sequence Match ( AT3G52680.1 )
(BLAST)

001: MISPTMEQGE SLRIRVVMGK DRISELPDGL LLKILSSLPT NIVVATSVLS KQWRSLWKLV PNLEFDSDDY ESEHYTFSEI VCKSFLSHKA PVLESFRLKF
101: VNFNPVDIGL WVGIAFSRHL RELVLDFYPA ELGKGVTFTF PSSLCTCNTL ETLKLVLCIL VDIPSPVLMK SLRTLHLEFV RYKDESSVRN LLSGCPGLEE
201: LRLYRGDDSD IKVFTIEVPS LQRLTIHDNN DGPEFWGYVI NAPFLKYLLI EELRCPEFCL NAPELVEANI AEVTSITIEK FLGSFTSVSR LLLNLSPLKI
301: TYPTGSMFYQ LVSLEMYTRE AEWWNLLTLM LENSPKLQVL KLTDRSQNFH KDGLVSGKWN EPKDVPECLL SQLETFVWRR FDWGREEEKE IATYILKNGR
401: RLKKATFSTN PIESEELNKL KERRKVLNGL DGVVRASNSC QLVFKFDPSY LGSDSP

Arabidopsis Description

F-box/FBD/LRR-repeat protein At3g52680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXJ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.