Factsheet for Bra023272.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	93.28	82.82
Bra034324.1-P	Field mustard	cytosol	17.47	56.52
AT3G51530.1	Thale cress	cytosol, endoplasmic reticulum, nucleus, plastid	58.87	48.13
Bra015355.1-P	Field mustard	cytosol, extracellular, nucleus	42.74	45.69
Bra034248.1-P	Field mustard	golgi, mitochondrion, plasma membrane	42.74	36.3
Bra019575.1-P	Field mustard	cytosol	22.85	36.02
Bra025236.1-P	Field mustard	cytosol	34.14	34.51
Bra026459.1-P	Field mustard	cytosol, nucleus, plastid	39.78	33.87
Bra040480.1-P	Field mustard	cytosol	45.43	30.9
Bra026446.1-P	Field mustard	cytosol	31.99	28.54
Bra006939.1-P	Field mustard	cytosol	24.46	27.58
Bra019111.1-P	Field mustard	cytosol	26.61	26.33
Bra007575.1-P	Field mustard	extracellular, vacuole	29.3	24.72
Bra007397.1-P	Field mustard	cytosol	27.42	23.61

Protein Annotations

EnsemblPlants:Bra023272.1	EnsemblPlants:Bra023272.1-P	EnsemblPlantsGene:Bra023272	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	PFAM:PF07723	PFAM:PF08387
SMART:SM00579	SUPFAM:SSF52058	UniParc:UPI0002542279	UniProt:M4E3C1	MapMan:35.1	:

Description

AT3G51530 (E=8e-127) | F-box family protein

Coordinates

chrA09:-:20044252..20045530

Molecular Weight (calculated)

42386.8 Da

IEP (calculated)

7.601

GRAVY (calculated)

-0.082

Length

372 amino acids

Sequence
(BLAST)

001: MSLLSHKSPV LETLHLKVND RCEDVYIGIW AGIAVTRHVR ELELDLGYLC GNPVRFPSCL LCFDTLETLK LKHYILLDIP SMVSLKSLRT LHLHSVVYKD
101: SESVRNLFAS CLNLEHLVVQ RGFHYNDGVR FVIESPSLKT LLVSGGETYG KQNGGYVINV PSLQHLTIQM LKGYEYCLIE NAPELVDANI INVSHTTNET
201: IMGSLKSAKR LSLDLSPLQI AYPTGMVFHQ LVSLEMYTHK VAWWNLLALM LDSSPKLQVL KLIDRSSHQP KLVSDKKDMP PGKWNQPENV PECLSSHLET
301: FVWTRPDWIR EEEKEVARYI LSNAQQLKKA TFIIDPIEPK RLFRLAKRRE MLNELPAVIM ASKSCNLVVE SE

Best Arabidopsis Sequence Match ( AT3G51530.1 )
(BLAST)

001: MKNSERFSAA KPLMEQGGKS SRKPGFMSED RISELPEVLL LQILSSLPTK LVISTSVLSK RWLSLWKMVQ RLEFESSRNI YDFAENVTRS LLSHKAPVLE
101: SLHLKVGDQF DGVYVGVWAT IAFTRHVREF VLDLSSYHGP RVRFPTSLFC FDTLETLKLD YVYIYVPCPV SMKSLRTLHL LSVVYKGDES GHNLFASCPN
201: LEHLVLRRGF FFDAVVNFII DAPSLKTLLL SDPFSARESS RGYVIKAPSL KYLGIESVEG FEYFLIENVT ELVEANIRNV SKIVNENILG SLKSAKRLSL
301: DLSPLKITYP TEVMYHQLVY LEMHTHKVEW WNLLTHMLDS SPKLQVLKLI DRETRHENLE FDKKYKDQGK WNQPKYVPEC LETFMWRNCN WGREEEKEVA
401: TYILRNARQL KKATFSTDPI EAKRLCKLAK RRKMREELDG VVMTSNSCHL VFEFE

Arabidopsis Description

F-box/FBD/LRR-repeat protein At3g51530 [Source:UniProtKB/Swiss-Prot;Acc:Q501E9]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.