Factsheet for Bra025236.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13667	Canola	extracellular, plasma membrane	73.64	97.83
Bra034324.1-P	Field mustard	cytosol	14.4	46.09
AT3G26920.3	Thale cress	cytosol	41.3	44.71
AT3G26930.2	Thale cress	extracellular, peroxisome, plastid	54.08	43.83
Bra034248.1-P	Field mustard	golgi, mitochondrion, plasma membrane	50.0	42.01
Bra006939.1-P	Field mustard	cytosol	32.34	36.06
Bra015355.1-P	Field mustard	cytosol, extracellular, nucleus	33.7	35.63
Bra019575.1-P	Field mustard	cytosol	22.83	35.59
Bra019111.1-P	Field mustard	cytosol	36.14	35.37
Bra026459.1-P	Field mustard	cytosol, nucleus, plastid	41.58	35.01
Bra023272.1-P	Field mustard	cytosol	34.51	34.14
Bra026446.1-P	Field mustard	cytosol	36.14	31.89
Bra040480.1-P	Field mustard	cytosol	47.01	31.63
Bra007575.1-P	Field mustard	extracellular, vacuole	33.42	27.89
Bra007397.1-P	Field mustard	cytosol	31.25	26.62

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra025236	EnsemblPlants:Bra025236.1	EnsemblPlants:Bra025236.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	UniProt:M4E8Y0	PFAM:PF00646	PFAM:PF08387	PANTHER:PTHR32212
PANTHER:PTHR32212:SF234	SMART:SM00256	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000253F623
SEG:seg	:	:	:	:	:

Description

AT3G26922 (E=4e-060) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G52680.2).

Coordinates

chrA06:-:22622111..22623583

Molecular Weight (calculated)

41819.7 Da

IEP (calculated)

5.525

GRAVY (calculated)

-0.044

Length

368 amino acids

Sequence
(BLAST)

001: MELKRRPSLS NGDRISELPD ALLLQILSLL PTTKDAVATS VLSKRWRFLC KMMPSLRFCY ERTNDLERFS DNVCTFLLSH QAPVLQSLHL EMNFGRGSTR
101: DIGVLLGVAF GLHVRELDLQ VYSGGEPYRF PTSLYKCGTL ETLKLGPNVL VDVPFPVCLK ALTTLRLYKV IVKDERSVVN LLSGCSSLEN LEVITCTHSD
201: VKTFTIAVPS LQRLTLITSI DEYELAYVIN VPSLKYLYLR GLAEGDSCLI ENTPELLEAN ITDMPVLDNS PNLQTLKLIT LWFRKGDWSP PKYVAECLLN
301: RLETFVWENY EGEIEDEREV AQYILRNASC LETATFSRTD IHPEKRLERL KELESVVRAS NSCQLVFK

Best Arabidopsis Sequence Match ( AT3G49030.2 )
(BLAST)

001: MEQQLKTDGL NLSIRDAVKE DRISELPEDL LLQILSDIPT ENVIATSVLS KRWRSLWKMV PNLTFDFTFD PKYHQTFSEN LYRSLTSHEA SVLESLQLNF
101: TRGIDGLNIG MWIATAYVRH VRKLVLVSFG DVRDKRARFR SALFNFNDTL DILEIQDYIL LDLPSPVCLK SLRELRLYEV HFKDEASVCN LLCGCPSLEV
201: LSVHRERNVD VETFTIVVPS LQRLTIYDFC IGGGKGGYVI NAPSLKYLNI VGFEGLDFCL IENAPELVEA EISDVSHIAN ENILESLTSV KRLSLESPIK
301: NSTLRYFFYF VLHKLPCSQL SCIEKGLDGQ NWNPPKCVPE CLLFHLEKFL WTGYEWQRGD EKEVATYILE NARLLKKATF STKRIDLENL EKRREMLNEL
401: ASVARASDSC HLVFHSI

Arabidopsis Description

Putative F-box/FBD/LRR-repeat protein At3g49030 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMU0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.