Factsheet for Bra040480.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48010	Canola	cytosol	76.97	93.76
Bra034324.1-P	Field mustard	cytosol	12.43	59.13
Bra019575.1-P	Field mustard	cytosol	20.48	47.46
Bra025236.1-P	Field mustard	cytosol	31.63	47.01
Bra034248.1-P	Field mustard	golgi, mitochondrion, plasma membrane	36.93	46.12
Bra015355.1-P	Field mustard	cytosol, extracellular, nucleus	29.07	45.69
Bra023272.1-P	Field mustard	cytosol	30.9	45.43
Bra026459.1-P	Field mustard	cytosol, nucleus, plastid	33.82	42.33
Bra006939.1-P	Field mustard	cytosol	25.23	41.82
Bra026446.1-P	Field mustard	cytosol	28.88	37.89
Bra019111.1-P	Field mustard	cytosol	25.23	36.7
Bra007575.1-P	Field mustard	extracellular, vacuole	26.14	32.43
Bra007397.1-P	Field mustard	cytosol	24.86	31.48

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra040480	EnsemblPlants:Bra040480.1	EnsemblPlants:Bra040480.1-P	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:Leu-rich_rpt_2
UniProt:M4FHA2	PFAM:PF00646	PFAM:PF07723	PFAM:PF08387	PFscan:PS50181	PANTHER:PTHR32212
PANTHER:PTHR32212:SF234	SMART:SM00256	SMART:SM00579	SUPFAM:SSF52058	SUPFAM:SSF81383	UniParc:UPI0002544819
SEG:seg	:	:	:	:	:

Description

AT3G49020 (E=2e-093) | F-box family protein

Coordinates

chrA04:+:18914074..18915875

Molecular Weight (calculated)

62593.9 Da

IEP (calculated)

5.072

GRAVY (calculated)

0.032

Length

547 amino acids

Sequence
(BLAST)

001: MMDWISELPR DLIIQILSSL STKDVTATSV LSKSWRSVWK MVPNIKFDSG YHYKTESHSF SEIVCKSLLS CSSPVLESLY LVNIYESEAS DDIELLIGVA
101: FARPVRKLVL ELLLDKDYDG ELIRILPSVF FSCNNTLEIL ELSSKLLLLD FPCRVSLKSL KKLRLIDVEF KDDESVCNLL CGCPILEDLV VHRRNSYDSK
201: AFIMAKICNS KYEDDLIRFP SVFSSGNNTL EILELSTMLL DFPCRVGLKS LKKLHLINVK FRDEESVCNL LCGCPILEDL TVDRRGNYDA ETFTIAVPSL
301: QRLTIVDTFQ GTANGGYVIN APSLKYLNIK GVGFEWFRGL ITLGECYEFF LIENATELVE AKIIGVIMDI HVHNEDILAS LASVKRLSLD FSPLKIKCPT
401: GITFYQLVSL ELNTRKSEWS NLLARMLDNS PKLQILKLIN TANDYNNRTL YSFRLVGEWE KRPKCVPECL LFHLVTFQWT NYLWELEEEL EVAKYILKNA
501: RWLKKATFYT EPEDVETLEE KREMLNELAS VVRASNSCHL VFESSSN

Best Arabidopsis Sequence Match ( AT3G49020.1 )
(BLAST)

001: MEQKCKIGGE GLRNRGLVNE EDRISELPEA LLLLILSSLP TETVIATSVL SKQWKSLWKL VPNLKFDSKY HYHYTFSDNV FRSLISHKAP VLDSLHLKVE
101: DKDDALDVGI LIGIAFSRHM RKFVLKITLL EESFVRFPSA WCSCNDTLEI LELKYCILLD FPSLVCLKSL RKLYLYHVRF NDEESVCNLL CGCPSLEDLV
201: VHRHSTTDVE SYTIAVPSLQ RLTIYDDYYG EGVGGYVINA PSLKYLNIDG FNGLEFCLIE KAPELVEAKI SAVFEIANEN IMDSLTSAKC LSLHLAPFKI
301: KYPTGKIFYQ LLSLELRAYS YEWWNLLWFM LDSSPKLQIL KLVDPYQFPK EDCSVGWEWS RPKCVPECLL FHLETFVWTR YEWQREDEKA VATYILKNAR
401: CLKKATLSTK PIGSEELEKL GKRREMLNEL ATQASPSNSC NLVFESE

Arabidopsis Description

FBD-associated F-box protein At3g49020 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMT9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.