Factsheet for AT3G49020.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G49030.1	Thale cress	cytosol	61.3	61.85
AT2G04230.1	Thale cress	cytosol	61.97	61.83
AT3G49045.1	Thale cress	cytosol	16.11	61.02
AT3G49040.1	Thale cress	cytosol	40.94	58.84
Bra019575.1-P	Field mustard	cytosol	29.08	55.08
AT3G52690.1	Thale cress	extracellular, plasma membrane	36.02	53.85
AT3G52680.1	Thale cress	cytosol	54.59	53.51
AT3G26922.2	Thale cress	cytosol	36.02	52.61
AT4G00160.1	Thale cress	cytosol	52.13	51.43
AT4G13965.1	Thale cress	endoplasmic reticulum, peroxisome	48.55	51.3
AT3G51530.1	Thale cress	cytosol, endoplasmic reticulum, nucleus, plastid	50.34	49.45
AT3G26920.3	Thale cress	cytosol	37.36	49.12
AT3G26930.2	Thale cress	extracellular, peroxisome, plastid	47.87	47.14
AT1G55030.2	Thale cress	cytosol	43.18	44.68
AT4G26340.1	Thale cress	cytosol	39.82	42.48
AT4G26350.1	Thale cress	cytosol	34.0	35.27
AT3G55670.1	Thale cress	cytosol	15.44	31.65

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:824063	ProteinID:AEE78487.1	ArrayExpress:AT3G49020	EnsemblPlantsGene:AT3G49020
RefSeq:AT3G49020	TAIR:AT3G49020	RefSeq:AT3G49020-TAIR-G	EnsemblPlants:AT3G49020.1	TAIR:AT3G49020.1	Unigene:At.53844
EMBL:BT026520	ProteinID:CAB62008.1	EMBL:DQ056616	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008150	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2
RefSeq:NP_190471.1	PFAM:PF00646	PFAM:PF07723	PFAM:PF08387	PO:PO:0007616	PO:PO:0009046
PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	UniProt:Q9SMT9	SMART:SM00579	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI00000A7CE8	SEG:seg	:	:	:

Description

FBD-associated F-box protein At3g49020 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMT9]

Coordinates

chr3:+:18169079..18170660

Molecular Weight (calculated)

51423.2 Da

IEP (calculated)

5.860

GRAVY (calculated)

-0.081

Length

447 amino acids

Sequence
(BLAST)

001: MEQKCKIGGE GLRNRGLVNE EDRISELPEA LLLLILSSLP TETVIATSVL SKQWKSLWKL VPNLKFDSKY HYHYTFSDNV FRSLISHKAP VLDSLHLKVE
101: DKDDALDVGI LIGIAFSRHM RKFVLKITLL EESFVRFPSA WCSCNDTLEI LELKYCILLD FPSLVCLKSL RKLYLYHVRF NDEESVCNLL CGCPSLEDLV
201: VHRHSTTDVE SYTIAVPSLQ RLTIYDDYYG EGVGGYVINA PSLKYLNIDG FNGLEFCLIE KAPELVEAKI SAVFEIANEN IMDSLTSAKC LSLHLAPFKI
301: KYPTGKIFYQ LLSLELRAYS YEWWNLLWFM LDSSPKLQIL KLVDPYQFPK EDCSVGWEWS RPKCVPECLL FHLETFVWTR YEWQREDEKA VATYILKNAR
401: CLKKATLSTK PIGSEELEKL GKRREMLNEL ATQASPSNSC NLVFESE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.