CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY01389
CDY29370
CDY43408
CDY44209
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62230.1	CDY01389	AT1G20140.1	12169662
AT3G62230.1	CDY29370	AT1G20140.1	12169662
AT3G62230.1	CDY43408	AT1G20140.1	12169662
AT3G62230.1	CDY44209	AT1G20140.1	12169662
AT3G62230.1	CDY63159	AT1G20140.1	12169662
AT3G62230.1	CDY67544	AT1G20140.1	12169662
AT3G62230.1	CDY68971	AT1G20140.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014407.1-P	Field mustard	cytosol	96.35	96.35
CDX93985	Canola	cytosol, nucleus, plastid	16.31	91.57
CDX93984	Canola	cytosol, nucleus, plasma membrane, plastid	50.64	87.08
AT3G62230.1	Thale cress	endoplasmic reticulum	45.92	46.42
CDX75406	Canola	endoplasmic reticulum, plastid	29.61	41.19
CDX69031	Canola	endoplasmic reticulum, plastid	29.4	41.02
CDX72454	Canola	extracellular	27.68	39.21
CDY49279	Canola	extracellular	27.47	38.91
CDY16441	Canola	plasma membrane	38.84	38.51
CDY70831	Canola	plasma membrane	30.69	38.13
CDY07436	Canola	plasma membrane	38.41	38.09
CDY52573	Canola	plasma membrane, vacuole	38.41	38.09
CDY61650	Canola	plasma membrane	38.2	37.87
CDY16442	Canola	plasma membrane	25.75	36.7
CDY58678	Canola	cytosol	10.3	34.29
KRH34702	Soybean	extracellular, plasma membrane	32.4	32.06
KRH73711	Soybean	plasma membrane	30.26	30.26
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.81	28.62
KRH46107	Soybean	endoplasmic reticulum, plasma membrane	30.26	26.76
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	29.83	26.38

Protein Annotations

EnsemblPlants:CDY66300	EnsemblPlantsGene:GSBRNA2T00053336001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR31639	PFAM:PF08387	PFscan:PS50181	ProteinID:CDY66300	ProteinID:CDY66300.1	SMART:SM00579
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EF368D	UniProt:A0A078JIM1	MapMan:35.1	:

Description

BnaA04g27260DBnaA04g27260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIM1]

Coordinates

chrLK035188:+:7435..8835

Molecular Weight (calculated)

53110.4 Da

IEP (calculated)

7.608

GRAVY (calculated)

0.005

Length

466 amino acids

Sequence
(BLAST)

001: MDSRRNRDRL STLPEHLLVP IISNLPFEEA VRTSVLSKPW KHLYHGTTNV SFKESEFVKR TVSSSEESLD EARAAFVRYV VNWTSTFSGD VIESFELRLS
101: KPFGFEAEIK HLIEFAVSKQ VKTLVLDFSE LSCDASNQVR PLILFQLPEC FYNQTTVESL KLFACGFDPS RLANPCAFKS VCFGYTELGR IMTLLSKSPL
201: LESLTVRNCW NVNLESITGD QNRLRELVFE NCVFATEYTL LDLPNIKVFK YIGSFHYFQF LAVNRRMEEA YLAYGAETGD EIGQFFCDVL YDLLSARKLT
301: VCPFLIKAIK DSDDPVRLKA PMETRHLVIN TGLVPDEFVG IRLMINSCPE LEILTLQMFP SVPVARYTPG FNPMSYWAYQ ISHKCLKKTL KVVQVRNFTG
401: SMYELILLRY LIRSARVLER VDLYLPVGAS ESEKSSVRAI ISTLGDEGVA SSKVLRIRQL TGRINC

Best Arabidopsis Sequence Match ( AT3G62230.1 )
(BLAST)

001: MDSGSAVDII STLSDFLLVL IISNLSFKEA LSTSRLSTRW RHICRETRNI SFREDEIVTF ADDSVARYYQ RAALVAYMVG WVNNFTGGVV ESFELRLSNS
101: YAFEEGVTTL IEFAVSKNVK HLFLDLSEPR WVTNNDAAQL EPGLIKLPES FYKITSLVTL KLFGCRFEPS RLAKPGMVKT MFFRWIRLEM LSALIAKTPL
201: LEILNIKNCW EIGLDAITGY NDRLMKLVFK YCSFSAQQTT LDVPNIQIFK YFGKVYRFEF ASANKLMEEA YLDYREESRY NVSAGAIISG FLYSMLSAKT
301: FTICPYVLQL IQECEDPVRL KAPMETRQLV LKTNFEPNEF VGIRFMLNSS PYLETLSFQM VGPRPIEEMV PQIDPEAYWG QNTSHECLKK TLKKVEVWSF
401: YGGTHELRVL EYLIRYGRML ERVDLYQPIG LDDIQLLPIR AAADRVGEFE ARSENLVVTF Y

Arabidopsis Description

F-box protein At3g62230 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Q1]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.