CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 3
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 4
vacuole 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011503.1-P	Field mustard	extracellular, plastid	99.4	99.4
CDX69031	Canola	endoplasmic reticulum, plastid	95.82	96.11
CDY49279	Canola	extracellular	62.99	64.13
CDX72454	Canola	extracellular	62.39	63.53
AT2G17305.1	Thale cress	cytosol	44.48	54.98
CDX93985	Canola	cytosol, nucleus, plastid	12.24	49.4
CDY58678	Canola	cytosol	14.93	35.71
CDY66300	Canola	cytosol	41.19	29.61
CDX93984	Canola	cytosol, nucleus, plasma membrane, plastid	23.28	28.78
CDY16441	Canola	plasma membrane	38.81	27.66
CDY07436	Canola	plasma membrane	38.21	27.23
CDY61650	Canola	plasma membrane	37.61	26.81
CDY52573	Canola	plasma membrane, vacuole	37.31	26.6
CDY70831	Canola	plasma membrane	28.36	25.33
CDY16442	Canola	plasma membrane	20.3	20.8
KRH34702	Soybean	extracellular, plasma membrane	28.66	20.38
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.61	20.34
KRH73711	Soybean	plasma membrane	27.46	19.74
KRH46107	Soybean	endoplasmic reticulum, plasma membrane	27.76	17.65
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	27.46	17.46

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX75406	ProteinID:CDX75406	ProteinID:CDX75406.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00121293001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646	PFAM:PF08387	PFscan:PS50181
PANTHER:PTHR31639	SUPFAM:SSF81383	UniParc:UPI0004EE3A35	:	:	:

Description

BnaA01g02960D

Coordinates

chrLK031804:-:973334..974847

Molecular Weight (calculated)

38765.4 Da

IEP (calculated)

8.401

GRAVY (calculated)

-0.143

Length

335 amino acids

Sequence
(BLAST)

001: MESGTKPNLL SNLPDCLLVL IISFLPFKQS VQTSVLAKRW KNLCRETTNL VFKESEFGLN QFVVDTEAKH SERRALFVSV MHQWISRFTG NTIETFELCL
101: PEPVGFEEDI MSLIEFAATK QTKNLVINLS SSNSRQPPGA LHIKLIYNQK NGLDITRLFS NLIYVRNLTI CPFLLEMMIQ DCDDPMKLHD PMKTRHLVIK
201: THMYPHEFGG ITIFLNSCPE LESLTFETYT TGPIVMSQRY WPLIHPKTFW LNNKTYECLE RTLKAVKVIN FCGIPNELHV LQYLIRTGRV MERLDLHAAK
301: TLNNEQRRLV LTAAEEFQKI VERGSRHLRV TLHNA

Best Arabidopsis Sequence Match ( AT2G17305.1 )
(BLAST)

001: MVEPDRVFFV RVMREWISRF TGKIIENFEI HLSQPMGFAG DIMSLTEFAT SRQVKNLVLD FSDPIQRNLS QAQQIIRDGL LRCRYPQKNE LDVSHLFFNL
101: LYVRNLTVCS FFLQVLQDCD DPMALHVSMK TRHLVMKTNM HANDFVGISI FLNSCPELES LTFDLVTSSR FVRAPSPLVI DPVSHWLTSK SYECLEKTLK
201: VVKITKFRGS SNELHMLQYL LRTGCVMERV DLYEAEGLNH NQKRWVLAGV EEVQQNFKRA SRHLRITLHN A

Arabidopsis Description

F-box/LRR protein [Source:UniProtKB/TrEMBL;Acc:Q3EBZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.