CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16442	Canola	plasma membrane	75.47	86.54
Bra009781.1-P	Field mustard	plasma membrane	99.2	79.15
CDY16441	Canola	plasma membrane	86.13	68.72
CDY07436	Canola	plasma membrane	85.87	68.51
CDY61650	Canola	plasma membrane	84.53	67.45
CDY52573	Canola	plasma membrane, vacuole	83.47	66.6
CDX93985	Canola	cytosol, nucleus, plastid	8.8	39.76
AT1G56400.1	Thale cress	cytosol, endoplasmic reticulum, plastid	46.93	36.74
AT3G29830.1	Thale cress	cytosol	43.2	34.91
AT5G54820.1	Thale cress	plasma membrane	43.2	34.32
CDY66300	Canola	cytosol	38.13	30.69
CDX69031	Canola	endoplasmic reticulum, plastid	26.13	29.34
CDX75406	Canola	endoplasmic reticulum, plastid	25.33	28.36
CDY49279	Canola	extracellular	24.53	27.96
CDX72454	Canola	extracellular	24.0	27.36
CDX93984	Canola	cytosol, nucleus, plasma membrane, plastid	19.73	27.31
CDY58678	Canola	cytosol	10.13	27.14
KRH34702	Soybean	extracellular, plasma membrane	32.0	25.48
KRH73711	Soybean	plasma membrane	29.87	24.03
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.07	22.07
KRH46107	Soybean	endoplasmic reticulum, plasma membrane	29.07	20.68
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	26.93	19.17

Protein Annotations

EnsemblPlants:CDY70831	EnsemblPlantsGene:GSBRNA2T00007771001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31639	PFAM:PF00646	PFscan:PS50181	ProteinID:CDY70831
ProteinID:CDY70831.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0004EE69ED	UniProt:A0A078JZ51	MapMan:35.1

Description

BnaAnng35140DBnaAnng35140D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JZ51]

Coordinates

chrLK043458:+:877..2815

Molecular Weight (calculated)

42483.4 Da

IEP (calculated)

4.927

GRAVY (calculated)

-0.019

Length

375 amino acids

Sequence
(BLAST)

001: MDSCDQPDII SNLPDVLLVL IISCLSFKEC VQTCALSKRW RSVYLETRNV SFKETDFLSP SVDANPIRNA LGRIVFVDYV RRWVIRIHDQ PIDTFGISIS
101: YPETYIDLIE SLIAFAVGKK VKNLVLDFSN PAWRTFHDVT LDELVVEIPQ SVYELATLES LKVGACKKFD PSKLSNLGKL NTISFGWMEL TDPKPLLKTS
201: RVKSLTINDC GELYFDTIKG NMREVAVKNC DFFPNCTFNL PSVDILKYSG DLLPFEFDNM NTIISEVEFD FRVLDNNNDE SNDSNTAEGG MLCHLLNNLL
301: DYGGRSATTL TVCPFLLKMI PRSEHPHVLH PMETKHLVLK TELHPREFNG IRLLLMNCPN LETLTIDLLP PSPIA

Best Arabidopsis Sequence Match ( AT1G56400.1 )
(BLAST)

001: MTFKRIASSI QQDRLSNLPD VLLIMIISCL SFKECIRTSV LAKRWRYLCR ETRNISFKET EYVDHFVSDK RSKRVSFAAY MCQWVSRYHG RYIETLEIYF
101: SIPSDFLAAV ESLIEFAVSR QVKNLVLDFS DPSWISTSCA SRYDYVCVQL PVCVYSLTTL ESLKIYSCGF DPSKFSNSRL PRKLSIGWIK LTDVESLLLN
201: SPTLKSLSIN YCWGIEIRNI AGDMKEFVFE SCDFSSFMVC CFDLPNVEIF KYSGQILSFD VKRMNMSIKD VILDFTAEGL YEDRNQRTKL EGSVLSAFLN
301: NLRGARTLSV CPYLLQTIQE CEDPFDLLRP METQHLVLRT RLHVMEFKGI KLLLDNCPNL ETLTFDIFSR SLFSYNKSYY GVGPRSYWKK NLTYKSLPKT
401: LKVVVVRNFT GRFGELNVLK FLIQSGRGRW PGREHGPMLE RVELYMDSSM AESQKELADD GAMMLQSISG DVQVLVYDP

Arabidopsis Description

Putative F-box/LRR-repeat protein At1g56400 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7X8]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.