CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum

Predictor Summary:

nucleus 2
extracellular 4
golgi 4
plasma membrane 5
endoplasmic reticulum 5
vacuole 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37978	Soybean	endoplasmic reticulum, plasma membrane	93.36	93.36
KRH73711	Soybean	plasma membrane	38.52	43.56
KRH34702	Soybean	extracellular, plasma membrane	33.97	38.0
KRH73712	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.73	35.86
CDX93985	Canola	cytosol, nucleus, plastid	5.31	33.73
CDY66300	Canola	cytosol	26.76	30.26
Bra014407.1-P	Field mustard	cytosol	26.57	30.04
CDX72454	Canola	extracellular	18.6	29.79
CDY16442	Canola	plasma membrane	18.41	29.66
Bra004102.1-P	Field mustard	plasma membrane	18.03	29.59
CDY49279	Canola	extracellular	18.22	29.18
Bra017630.1-P	Field mustard	extracellular	18.22	29.18
CDY70831	Canola	plasma membrane	20.68	29.07
AT2G17305.1	Thale cress	cytosol	14.8	28.78
Bra039758.1-P	Field mustard	plasma membrane	25.24	28.3
CDY16441	Canola	plasma membrane	25.24	28.3
CDX75406	Canola	endoplasmic reticulum, plastid	17.65	27.76
Bra011503.1-P	Field mustard	extracellular, plastid	17.65	27.76
CDX93984	Canola	cytosol, nucleus, plasma membrane, plastid	14.23	27.68
Bra009781.1-P	Field mustard	plasma membrane	24.67	27.66
AT3G29830.1	Thale cress	cytosol	24.29	27.59
Bra029003.1-P	Field mustard	cytosol, plasma membrane, plastid	24.48	27.39
CDY52573	Canola	plasma membrane, vacuole	24.29	27.23
AT5G54820.1	Thale cress	plasma membrane	24.29	27.12
AT3G62230.1	Thale cress	endoplasmic reticulum	23.72	27.11
CDX69031	Canola	endoplasmic reticulum, plastid	17.08	26.95
AT1G56400.1	Thale cress	cytosol, endoplasmic reticulum, plastid	24.48	26.93
CDY07436	Canola	plasma membrane	23.91	26.81
CDY61650	Canola	plasma membrane	23.53	26.38
Bra004104.1-P	Field mustard	cytosol	6.26	23.57
CDY58678	Canola	cytosol	5.88	22.14

Protein Annotations

EntrezGene:102660850	Gene3D:3.80.10.10	MapMan:35.1	EMBL:ACUP02005320	InterPro:F-box-like_dom_sf	InterPro:FBD
EnsemblPlantsGene:GLYMA_08G312700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR032675	UniProt:K7K8U3
EnsemblPlants:KRH46107	ProteinID:KRH46107	ProteinID:KRH46107.1	InterPro:LRR_dom_sf	PFAM:PF08387	PANTHER:PTHR31639
SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000296D092	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:43243759..43247353

Molecular Weight (calculated)

61417.8 Da

IEP (calculated)

4.519

GRAVY (calculated)

-0.155

Length

527 amino acids

Sequence
(BLAST)

001: MENNTDKLSS LPELLCLFII SLLPFKDAVR TCILSKYWLH IWKNSPKIEF SENFDGNFIG RFEPFSSIKA RRSVFMKFLK LWLDFRKEGD VEKFSLKFSK
101: PKNDHREIIE GCIAFVTQHG VKELELDFSD PFWEEEVIPN KREALFELPK LAYENKPNIE SLKLSSCSFR ENDLSNWQAL KEVTFGWMEV TLDAMTIVLS
201: NCKMIESLVL NKCWNLSHFE IGSEALSLKR LVVDKCSFRN ALFKVSAPNL CFFKYFGKLC FFEMKNTLAI EEAHLHFYLG YDNVGTGARV LYDLVKDLYN
301: ARVLTVCPYL IQVICTGEKI RMERDMNARH LILRMNMLRC ELRAVSFFLL SCPMLECLTF ELGSEIILPD YQAMWIDSDE EQDDLPLWID SDEDQDDQAM
401: WMDNDFENYD DDDEYNIDDE DNIYDDYCTD FINMVDNQIK GMKNVINYNC LESSLKLVEV KDFVGSKNGL VFLGYLIRYG KVLKNVSINV LKTELEGSSN
501: VAFYSAIEEY LMTTPRASSN LQISMCY

Best Arabidopsis Sequence Match ( AT1G56400.1 )
(BLAST)

001: MTFKRIASSI QQDRLSNLPD VLLIMIISCL SFKECIRTSV LAKRWRYLCR ETRNISFKET EYVDHFVSDK RSKRVSFAAY MCQWVSRYHG RYIETLEIYF
101: SIPSDFLAAV ESLIEFAVSR QVKNLVLDFS DPSWISTSCA SRYDYVCVQL PVCVYSLTTL ESLKIYSCGF DPSKFSNSRL PRKLSIGWIK LTDVESLLLN
201: SPTLKSLSIN YCWGIEIRNI AGDMKEFVFE SCDFSSFMVC CFDLPNVEIF KYSGQILSFD VKRMNMSIKD VILDFTAEGL YEDRNQRTKL EGSVLSAFLN
301: NLRGARTLSV CPYLLQTIQE CEDPFDLLRP METQHLVLRT RLHVMEFKGI KLLLDNCPNL ETLTFDIFSR SLFSYNKSYY GVGPRSYWKK NLTYKSLPKT
401: LKVVVVRNFT GRFGELNVLK FLIQSGRGRW PGREHGPMLE RVELYMDSSM AESQKELADD GAMMLQSISG DVQVLVYDP

Arabidopsis Description

Putative F-box/LRR-repeat protein At1g56400 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7X8]
SUBAcon: [cytosol,endoplasmic reticulum,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.