Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07436 | Canola | plasma membrane | 94.47 | 94.47 |
| CDY58678 | Canola | cytosol | 25.74 | 86.43 |
| CDY16441 | Canola | plasma membrane | 85.74 | 85.74 |
| CDY70831 | Canola | plasma membrane | 67.45 | 84.53 |
| CDY16442 | Canola | plasma membrane | 57.87 | 83.18 |
| CDY52573 | Canola | plasma membrane, vacuole | 79.79 | 79.79 |
| AT1G56400.1 | Thale cress | cytosol, endoplasmic reticulum, plastid | 46.17 | 45.3 |
| AT5G54820.1 | Thale cress | plasma membrane | 44.26 | 44.07 |
| AT3G29830.1 | Thale cress | cytosol | 41.49 | 42.03 |
| CDX93985 | Canola | cytosol, nucleus, plastid | 7.23 | 40.96 |
| CDX93984 | Canola | cytosol, nucleus, plasma membrane, plastid | 22.77 | 39.48 |
| CDX69031 | Canola | endoplasmic reticulum, plastid | 27.45 | 38.62 |
| CDY66300 | Canola | cytosol | 37.87 | 38.2 |
| CDX75406 | Canola | endoplasmic reticulum, plastid | 26.81 | 37.61 |
| CDY49279 | Canola | extracellular | 25.96 | 37.08 |
| CDX72454 | Canola | extracellular | 25.53 | 36.47 |
| KRH34702 | Soybean | extracellular, plasma membrane | 29.79 | 29.72 |
| KRH73711 | Soybean | plasma membrane | 27.45 | 27.68 |
| KRH73712 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 16.17 | 26.21 |
| KRH46107 | Soybean | endoplasmic reticulum, plasma membrane | 26.38 | 23.53 |
| KRH37978 | Soybean | endoplasmic reticulum, plasma membrane | 24.89 | 22.2 |
Protein Annotations
| EnsemblPlants:CDY61650 | EnsemblPlantsGene:GSBRNA2T00034145001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31639 | PFAM:PF00646 | PFscan:PS50181 | ProteinID:CDY61650 |
| ProteinID:CDY61650.1 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0004EE6DB7 | UniProt:A0A078J9C7 | MapMan:35.1 |
Description
BnaCnng38140DBnaCnng38140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9C7]
Coordinates
chrLK034021:+:28069..30441
Molecular Weight (calculated)
53853.2 Da
IEP (calculated)
5.987
GRAVY (calculated)
-0.091
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSDQADRI SNLPDVLLVL IISCLSFKEC VQTCALSKRW RSVYLETRNV SFKETDFWSP SVDANPVRNA LGRIVFVDYV RHWVTRIHDQ PIDTLEISIS
101: YPKTYLDLIE SLIAFAVRKK VKNLVLDFSN HAWRTFHDVK CQDLVVEIPQ SVYDLTSLES LKVAACMDFD PAKLSNLGKL KSVSFGWMEL KNPEPLLKTS
201: RIESLSMNDC WGLDFELVSG DMREVAIKNC DFFLNCTFDL PRVDILKYSG DILRFEFDKM NTIISEVEFD FRVLDNKIDE SNDPNTAEGG MLCHLLNNLL
301: DNGGRSATTL TVCPFLLKMI PRSNLHFLRP METKHLVLKT ELHPREFNGI RLLLMNCPNL ETLTIDLLPP SPIATASSYA GIDPQTYWMP NISYECQRET
401: LKAVIVKNFI GGAKELHIVK FFIRSGYDRL ERVELYMPFD LDNGQMVFAR AKSEMLQRSA NHLQVLVHNS
101: YPKTYLDLIE SLIAFAVRKK VKNLVLDFSN HAWRTFHDVK CQDLVVEIPQ SVYDLTSLES LKVAACMDFD PAKLSNLGKL KSVSFGWMEL KNPEPLLKTS
201: RIESLSMNDC WGLDFELVSG DMREVAIKNC DFFLNCTFDL PRVDILKYSG DILRFEFDKM NTIISEVEFD FRVLDNKIDE SNDPNTAEGG MLCHLLNNLL
301: DNGGRSATTL TVCPFLLKMI PRSNLHFLRP METKHLVLKT ELHPREFNGI RLLLMNCPNL ETLTIDLLPP SPIATASSYA GIDPQTYWMP NISYECQRET
401: LKAVIVKNFI GGAKELHIVK FFIRSGYDRL ERVELYMPFD LDNGQMVFAR AKSEMLQRSA NHLQVLVHNS
001: MTFKRIASSI QQDRLSNLPD VLLIMIISCL SFKECIRTSV LAKRWRYLCR ETRNISFKET EYVDHFVSDK RSKRVSFAAY MCQWVSRYHG RYIETLEIYF
101: SIPSDFLAAV ESLIEFAVSR QVKNLVLDFS DPSWISTSCA SRYDYVCVQL PVCVYSLTTL ESLKIYSCGF DPSKFSNSRL PRKLSIGWIK LTDVESLLLN
201: SPTLKSLSIN YCWGIEIRNI AGDMKEFVFE SCDFSSFMVC CFDLPNVEIF KYSGQILSFD VKRMNMSIKD VILDFTAEGL YEDRNQRTKL EGSVLSAFLN
301: NLRGARTLSV CPYLLQTIQE CEDPFDLLRP METQHLVLRT RLHVMEFKGI KLLLDNCPNL ETLTFDIFSR SLFSYNKSYY GVGPRSYWKK NLTYKSLPKT
401: LKVVVVRNFT GRFGELNVLK FLIQSGRGRW PGREHGPMLE RVELYMDSSM AESQKELADD GAMMLQSISG DVQVLVYDP
101: SIPSDFLAAV ESLIEFAVSR QVKNLVLDFS DPSWISTSCA SRYDYVCVQL PVCVYSLTTL ESLKIYSCGF DPSKFSNSRL PRKLSIGWIK LTDVESLLLN
201: SPTLKSLSIN YCWGIEIRNI AGDMKEFVFE SCDFSSFMVC CFDLPNVEIF KYSGQILSFD VKRMNMSIKD VILDFTAEGL YEDRNQRTKL EGSVLSAFLN
301: NLRGARTLSV CPYLLQTIQE CEDPFDLLRP METQHLVLRT RLHVMEFKGI KLLLDNCPNL ETLTFDIFSR SLFSYNKSYY GVGPRSYWKK NLTYKSLPKT
401: LKVVVVRNFT GRFGELNVLK FLIQSGRGRW PGREHGPMLE RVELYMDSSM AESQKELADD GAMMLQSISG DVQVLVYDP
Arabidopsis Description
Putative F-box/LRR-repeat protein At1g56400 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7X8]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.